An evaluation of the accuracy and speed of metagenome analysis tools.
about
Toward Accurate and Quantitative Comparative MetagenomicsSUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic dataMEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing DataThe single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data.k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data setsStrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees.Targeted metagenomic sequencing data of human gut microbiota associated with Blastocystis colonizationInsights into study design and statistical analyses in translational microbiome studiesHigher classification sensitivity of short metagenomic reads with CLARK-S.Evaluating techniques for metagenome annotation using simulated sequence dataWEVOTE: Weighted Voting Taxonomic Identification Method of Microbial SequencesAccelerating metagenomic read classification on CUDA-enabled GPUs.Assessment of Common and Emerging Bioinformatics Pipelines for Targeted MetagenomicsAncient plant DNA in lake sediments.A Robust Framework for Microbial Archaeology.A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy.A Metagenomic Approach to Cyanobacterial Genomics.Fast and sensitive taxonomic classification for metagenomics with KaijuColonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota.Significant loss of sensitivity and specificity in the taxonomic classification occurs when short 16S rRNA gene sequences are usedCentrifuge: rapid and sensitive classification of metagenomic sequences.MetaPalette: a k-mer Painting Approach for Metagenomic Taxonomic Profiling and Quantification of Novel Strain Variation.MetaMeta: integrating metagenome analysis tools to improve taxonomic profiling.A clinician's guide to microbiome analysis.Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks.Metagenomic Chromosome Conformation Capture (3C): techniques, applications, and challenges.SLIMM: species level identification of microorganisms from metagenomes.Pseudoalignment for metagenomic read assignment.Phylogenetic Heatmaps Highlight Composition Biases in Sequenced Reads.MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.DUDes: a top-down taxonomic profiler for metagenomics.Temporal dynamics in microbial soil communities at anthrax carcass sitesComprehensive benchmarking and ensemble approaches for metagenomic classifiers.Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.MetaGen: reference-free learning with multiple metagenomic samplesAlignment-free sequence comparison: benefits, applications, and tools.Metagenomic characterization of ambulances across the USAAbundance estimation and differential testing on strain level in metagenomics data.MetaCache: Context-aware classification of metagenomic reads using minhashing.A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.
P2860
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P2860
An evaluation of the accuracy and speed of metagenome analysis tools.
description
2016 nî lūn-bûn
@nan
2016年の論文
@ja
2016年論文
@yue
2016年論文
@zh-hant
2016年論文
@zh-hk
2016年論文
@zh-mo
2016年論文
@zh-tw
2016年论文
@wuu
2016年论文
@zh
2016年论文
@zh-cn
name
An evaluation of the accuracy and speed of metagenome analysis tools.
@ast
An evaluation of the accuracy and speed of metagenome analysis tools.
@en
type
label
An evaluation of the accuracy and speed of metagenome analysis tools.
@ast
An evaluation of the accuracy and speed of metagenome analysis tools.
@en
prefLabel
An evaluation of the accuracy and speed of metagenome analysis tools.
@ast
An evaluation of the accuracy and speed of metagenome analysis tools.
@en
P2860
P356
P1433
P1476
An evaluation of the accuracy and speed of metagenome analysis tools.
@en
P2093
Karen L Adair
Paul P Gardner
P2860
P2888
P356
10.1038/SREP19233
P407
P577
2016-01-18T00:00:00Z