Coarse-grained biomolecular simulation with REACH: realistic extension algorithm via covariance Hessian.
about
Effective harmonic potentials: insights into the internal cooperativity and sequence-specificity of protein dynamicsFlexE: Using elastic network models to compare models of protein structure.Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory.Defining coarse-grained representations of large biomolecules and biomolecular complexes from elastic network models.Interaction energy based protein structure networksREACH coarse-grained normal mode analysis of protein dimer interaction dynamics.Application of elastic network models to proteins in the crystalline state.Integrating protein structural dynamics and evolutionary analysis with Bio3D.Using entropy maximization to understand the determinants of structural dynamics beyond native contact topologyNormal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.Are different stoichiometries feasible for complexes between lymphotoxin-alpha and tumor necrosis factor receptor 1?Energy landscape of all-atom protein-protein interactions revealed by multiscale enhanced sampling.Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry DependenceElastic Network Models are Robust to Variations in FormalismNormal mode analysis with molecular geometry restraints: bridging molecular mechanics and elastic modelsPIM: phase integrated method for normal mode analysis of biomolecules in a crystalline environmentGating mechanisms of mechanosensitive channels of large conductance, II: systematic study of conformational transitions.REACH coarse-grained biomolecular simulation: transferability between different protein structural classes.Systematic multiscale parameterization of heterogeneous elastic network models of proteinsCoarse-grained models reveal functional dynamics--I. Elastic network models--theories, comparisons and perspectivesAggregation of amyloids in a cellular context: modelling and experiment.Perspective: Coarse-grained models for biomolecular systems.The maximum penalty criterion for ridge regression: application to the calibration of the force constant in elastic network models.Multiscale design of coarse-grained elastic network-based potentials for the μ opioid receptor.Substrate-modulated thermal fluctuations affect long-range allosteric signaling in protein homodimers: exemplified in CAP.On the functional significance of soft modes predicted by coarse-grained models for membrane proteins.Elastic network model of learned maintained contacts to predict protein motion.Characterizing protein energy landscape by self-learning multiscale simulations: application to a designed β-hairpin.Sequence composition and environment effects on residue fluctuations in protein structures.The effects of rigid motions on elastic network model force constants.Physical arguments for distance-weighted interactions in elastic network models for proteins.Protein electron transfer: Dynamics and statistics.Self-learning multiscale simulation for achieving high accuracy and high efficiency simultaneously.Jumping between protein conformers using normal modes.Solvated dissipative electro-elastic network model of hydrated proteins.
P2860
Q28536143-F3BE8CFE-A42F-42D9-A8EC-F0DD0B238828Q30370013-1A567BF7-E236-4DA0-A235-F134066DCE14Q30375519-3CE77476-76F9-4D1B-91F9-CE29FEB88D3AQ30381803-05DA6063-C8DF-42CA-918D-4A8D69785C8BQ30396767-B39FE2CE-3781-41C1-9A91-C8EEF6C6EA0BQ30479931-715C5D83-071A-422B-8949-A1692CAD4334Q30483908-B8702922-A563-41C9-9358-744401CF083CQ30612041-72CEB28F-8978-4C5C-A785-9DE37DE5A9B4Q33619016-CC130A12-9253-42E2-B33A-59ED45BD9415Q33718901-501F05EB-2C33-48A1-BFF7-8D52887E1C4BQ34262443-4589102C-2563-45EB-BA3F-484299590661Q35361704-FFB514CF-705B-498B-A25C-FF56D4625E70Q35857012-EBA2BE61-68DE-446A-AB59-5577285793BFQ36178591-69FC33D6-3D4E-4783-81AA-27FFAA1B590DQ36541473-819AD102-A333-4A38-9F40-BE709A09FBDAQ36674489-02536A70-BBCC-415F-97E1-17800D489FEBQ36737167-A6D63332-937C-45C3-80A7-0D0550084766Q36791225-0416C3FF-EA85-49A7-B016-40D666C40371Q36938668-3A09E22A-19AB-4341-A7A2-59B5B5CC2C3FQ37610797-DAFCC0AF-458F-4207-B21C-5084413748F5Q37922207-7EB86006-6322-419D-AB32-B8DC5A5B12C7Q38136697-90FC02FF-DF34-49F8-AF2D-B06578A5B019Q38757940-1D9D565C-4E67-4A6B-99A3-2BF2FB65B192Q39449058-67684600-2BE3-4A9C-8B3E-4A93223E7023Q40624710-0C41C9BA-1471-4B67-88DA-9166DCF67A8DQ41172407-7250D26D-FE19-4361-B5BA-B74C03AE41CEQ41561349-B2F9C1E1-2C05-4B85-BD89-36E370871CB9Q42150750-92604010-C966-4828-8F8F-18EC608AD924Q42380648-83095DE9-9504-4FE9-9BC0-429DAE828F54Q42602581-449D3D98-D4D6-4569-95FB-38E009DD7C20Q42633166-9EABC8FE-A858-40C1-9461-EC42715C2F71Q43778317-4E61243B-A660-434C-B1B2-F692A8701BD8Q45976828-F9954681-C171-4C46-BC35-5E8A0D41E0F0Q48193642-3C479187-C9D5-4F1C-909D-8965D1A65569Q50021225-96039606-68CA-493C-864F-F0B8626750AB
P2860
Coarse-grained biomolecular simulation with REACH: realistic extension algorithm via covariance Hessian.
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
2007年论文
@zh
2007年论文
@zh-cn
name
Coarse-grained biomolecular si ...... orithm via covariance Hessian.
@ast
Coarse-grained biomolecular si ...... orithm via covariance Hessian.
@en
type
label
Coarse-grained biomolecular si ...... orithm via covariance Hessian.
@ast
Coarse-grained biomolecular si ...... orithm via covariance Hessian.
@en
prefLabel
Coarse-grained biomolecular si ...... orithm via covariance Hessian.
@ast
Coarse-grained biomolecular si ...... orithm via covariance Hessian.
@en
P2860
P1433
P1476
Coarse-grained biomolecular si ...... gorithm via covariance Hessian
@en
P2093
Kei Moritsugu
P2860
P304
P356
10.1529/BIOPHYSJ.107.111898
P407
P577
2007-08-10T00:00:00Z