methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles - Wikidata - wikimedia - TriplyDB

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

http://www.wikidata.org/entity/Q36378100

about

Profiling genome-wide DNA methylation Base resolution methylome profiling: considerations in platform selection, data preprocessing and analysis Review of processing and analysis methods for DNA methylation array data Behavioural traits propagate across generations via segregated iterative-somatic and gametic epigenetic mechanisms.New IDH1 mutant inhibitors for treatment of acute myeloid leukemia WBSA: web service for bisulfite sequencing data analysis 5'-Hydroxymethylcytosine Precedes Loss of CpG Methylation in Enhancers and Genes Undergoing Activation in Cardiomyocyte Maturation Tris(1,3-dichloro-2-propyl)phosphate Induces Genome-Wide Hypomethylation within Early Zebrafish Embryos DNMT3A mutations promote anthracycline resistance in acute myeloid leukemia via impaired nucleosome remodeling Brain feminization requires active repression of masculinization via DNA methylation GobyWeb: simplified management and analysis of gene expression and DNA methylation sequencing data Next-generation technologies and data analytical approaches for epigenomics.A Bayesian hierarchical model to detect differentially methylated loci from single nucleotide resolution sequencing data.MOABS: model based analysis of bisulfite sequencing data.DMAP: differential methylation analysis package for RRBS and WGBS data.Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis Exaggerated CpH methylation in the autism-affected brain.Comprehensive analysis of DNA methylation data with RnBeads.WGBSSuite: simulating whole-genome bisulphite sequencing data and benchmarking differential DNA methylation analysis tools.methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data.missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.CRCDA--Comprehensive resources for cancer NGS data analysis.A Flexible, Efficient Binomial Mixed Model for Identifying Differential DNA Methylation in Bisulfite Sequencing Data.metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data.Detection of differentially methylated regions from bisulfite-seq data by hidden Markov models incorporating genome-wide methylation level distributions.A full Bayesian partition model for identifying hypo- and hyper-methylated loci from single nucleotide resolution sequencing data.Differential methylation analysis for BS-seq data under general experimental design.An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology.Detection of differentially methylated regions in whole genome bisulfite sequencing data using local Getis-Ord statistics.Statistical challenges in analyzing methylation and long-range chromosomal interaction data Statistical method evaluation for differentially methylated CpGs in base resolution next-generation DNA sequencing data.Differential DNA methylation at conserved non-genic elements and evidence for transgenerational inheritance following developmental exposure to mono(2-ethylhexyl) phthalate and 5-azacytidine in zebrafish Zeb2 Regulates Cell Fate at the Exit from Epiblast State in Mouse Embryonic Stem Cells DNA methylation and Transcriptome Changes Associated with Cisplatin Resistance in Ovarian Cancer.ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing.Clinical Genomics: Challenges and Opportunities Integration of DNA methylation and gene transcription across nineteen cell types reveals cell type-specific and genomic region-dependent regulatory patterns.Comparative Analysis of Genome Wide DNA Methylation Profiles for the Genic Male Sterile Cabbage Line 01-20S and Its Maintainer Line.Targeted DNA methylation in vivo using an engineered dCas9-MQ1 fusion protein.Epigenetic regulation of lateralized fetal spinal gene expression underlies hemispheric asymmetries

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methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

http://www.wikidata.org/entity/Q36378100

description

2012 nî lūn-bûn

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2012年の論文

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2012年学术文章

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2012年学术文章

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2012年学术文章

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2012年学术文章

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2012年學術文章

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2012年學術文章

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2012年學術文章

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methylKit: a comprehensive R p ...... -wide DNA methylation profiles

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Ari Melnick

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Christopher E Mason

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Francine E Garrett-Bakelman

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Matthias Kormaksson

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Sheng Li

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P2860

Bioconductor: open software development for computational biology and bioinformatics

Identification and characterization of a family of mammalian methyl-CpG binding proteins

Genome-scale DNA methylation maps of pluripotent and differentiated cells

Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

Human DNA methylomes at base resolution show widespread epigenomic differences

Statistical significance for genomewide studies

Gene expression profiling predicts clinical outcome of breast cancer

The Sequence Alignment/Map format and SAMtools

A gene hypermethylation profile of human cancer

Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

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10

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13

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Maria E Figueroa

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2012-10-03T00:00:00Z

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232007486

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1050578553

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23034086

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DNA methylation

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3491415

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