Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations
about
Structural diversity of supercoiled DNA.Close encounters with DNADNA structure and functionAssessing the Current State of Amber Force Field Modifications for DNADNA minicircles clarify the specific role of DNA structure on retroviral integrationConformational analysis of nucleic acids revisited: Curves+In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-formStretched DNA investigated using molecular-dynamics and quantum-mechanical calculations.Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicirclesRole of microscopic flexibility in tightly curved DNA.Effect of spontaneous twist on DNA minicirclesDNA curvature and flexibility in vitro and in vivo.Chemically accurate coarse graining of double-stranded DNA.Working the kinks out of nucleosomal DNAExperimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence.Revisiting the Anomalous Bending Elasticity of Sharply Bent DNACommunication: Origin of the contributions to DNA structure in phages.Bullied no more: when and how DNA shoves proteins around.Modeling and Analysis of Intercalant Effects on Circular DNA ConformationSmall DNA circles as probes of DNA topology.Characterization of the geometry and topology of DNA pictured as a discrete collection of atoms.Effect of the boundary conditions and influence of the rotational inertia on the vibrational modes of an elastic ring.The regulatory role of DNA supercoiling in nucleoprotein complex assembly and genetic activity.Structure and dynamics of DNA loops on nucleosomes studied with atomistic, microsecond-scale molecular dynamics.Local and global effects of strong DNA bending induced during molecular dynamics simulations.Atomistic Molecular Dynamics Simulations of DNA Minicircle Topoisomers: A Practical Guide to Setup, Performance, and Analysis.Simulation of DNA Supercoil RelaxationAtomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.Supercoiling and denaturation of DNA loops.Effect of bending anisotropy on the 3D conformation of short DNA loops.Thermodynamics of writhe in DNA minicircles from molecular dynamics simulations.Decoding the conformation-linked functional properties of nucleic acids by the use of computational tools.Molecular origins of DNA flexibility: sequence effects on conformational and mechanical properties.RELATIONSHIP BETWEEN THE GENOME PACKING IN THE BACTERIOPHAGE CAPSID AND THE KINETICS OF DNA EJECTIONPulling of double-stranded DNA by atomic force microscopy: a simulation in atomistic detailsProbing hyper-negatively supercoiled mini-circles with nucleases and DNA binding proteins
P2860
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P2860
Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年学术文章
@wuu
2007年学术文章
@zh-cn
2007年学术文章
@zh-hans
2007年学术文章
@zh-my
2007年学术文章
@zh-sg
2007年學術文章
@yue
2007年學術文章
@zh
2007年學術文章
@zh-hant
name
Mapping the phase diagram of t ...... molecular dynamics simulations
@ast
Mapping the phase diagram of t ...... molecular dynamics simulations
@en
type
label
Mapping the phase diagram of t ...... molecular dynamics simulations
@ast
Mapping the phase diagram of t ...... molecular dynamics simulations
@en
prefLabel
Mapping the phase diagram of t ...... molecular dynamics simulations
@ast
Mapping the phase diagram of t ...... molecular dynamics simulations
@en
P2860
P356
P1476
Mapping the phase diagram of t ...... molecular dynamics simulations
@en
P2093
Charles A Laughton
Tanniemola B Liverpool
P2860
P356
10.1093/NAR/GKM891
P407
P577
2007-11-05T00:00:00Z