Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
about
Rich RNA Structure Landscapes Revealed by Mutate-and-Map AnalysisTranscending the prediction paradigm: novel applications of SHAPE to RNA function and evolutionRNA folding with hard and soft constraintsComputational analysis of RNA structures with chemical probing data.Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing dataData-directed RNA secondary structure prediction using probabilistic modeling.Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data.ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search.High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states.Rational experiment design for sequencing-based RNA structure mapping.Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations.Computational analysis of conserved RNA secondary structure in transcriptomes and genomes.Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data.Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions.RNA structure through multidimensional chemical mapping.Metrics for rapid quality control in RNA structure probing experiments.Full-length RNA structure prediction of the HIV-1 genome reveals a conserved core domainComparative RNA Genomics.Allele-specific SHAPE-MaP assessment of the effects of somatic variation and protein binding on mRNA structure.Modeling RNA secondary structure folding ensembles using SHAPE mapping data.Evaluating the quality of SHAPE data simulated by k-mers for RNA structure prediction.RGRNA: prediction of RNA secondary structure based on replacement and growth of stems.Conditioning and Robustness of RNA Boltzmann Sampling under Thermodynamic Parameter Perturbations.Molecular Dynamics Simulations Reveal an Interplay between SHAPE Reagent Binding and RNA Flexibility.Statistical modeling of RNA structure profiling experiments enables parsimonious reconstruction of structure landscapes.PATTERNA: transcriptome-wide search for functional RNA elements via structural data signatures.Evaluation of global HIV/SIV envelope gp120 RNA structure and evolution within and among infected hosts.Automated Recognition of RNA Structure Motifs by Their SHAPE Data Signatures
P2860
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P2860
Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
description
2013 nî lūn-bûn
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2013年の論文
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2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
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2013年论文
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2013年论文
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name
Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
@ast
Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
@en
type
label
Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
@ast
Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
@en
prefLabel
Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
@ast
Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
@en
P2093
P2860
P356
P1476
Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.
@en
P2093
Christine E Heitsch
Jørgen Kjems
M Shel Swenson
Zsuzsanna Sükösd
P2860
P304
P356
10.1093/NAR/GKS1283
P407
P577
2013-01-15T00:00:00Z