Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops. - Wikidata - wikimedia - TriplyDB

Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops.

Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops.

http://www.wikidata.org/entity/Q36879547

about

Blind tests of RNA nearest-neighbor energy prediction Energetic signatures of single base bulges: thermodynamic consequences and biological implications.Non-nearest-neighbor dependence of stability for group III RNA single nucleotide bulge loops Improved model to predict the free energy contribution of trinucleotide bulges to RNA duplex stability Positional and neighboring base pair effects on the thermodynamic stability of RNA single mismatches Non-nearest-neighbor dependence of the stability for RNA group II single-nucleotide bulge loops.Dynamic motions of the HIV-1 frameshift site RNA.Determination of the secondary structure of group II bulge loops using the fluorescent probe 2-aminopurine.Thermodynamic examination of 1- to 5-nt purine bulge loops in RNA and DNA constructs.Effects of non-nearest neighbors on the thermodynamic stability of RNA GNRA hairpin tetraloops.Stability of single-nucleotide bulge loops embedded in a GAAA RNA hairpin stem.Thermodynamic analysis of 5' and 3' single- and 3' double-nucleotide overhangs neighboring wobble terminal base pairs.Improved RNA secondary structure prediction by maximizing expected pair accuracy Modified siRNA structure with a single nucleotide bulge overcomes conventional siRNA-mediated off-target silencing.Measuring thermodynamic details of DNA hybridization using fluorescence.Influence of two bulge loops on the stability of RNA duplexes.An asymmetric mesoscopic model for single bulges in RNA.Secondary Structure Prediction of Single Sequences Using RNAstructure.Blind prediction of noncanonical RNA structure at atomic accuracy.

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P2860

Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops.

http://www.wikidata.org/entity/Q36879547

description

2007 nî lūn-bûn

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Non-nearest-neighbor dependenc ...... single-nucleotide bulge loops.

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Non-nearest-neighbor dependenc ...... single-nucleotide bulge loops.

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Non-nearest-neighbor dependenc ...... single-nucleotide bulge loops.

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Allison C Zyra

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Chad A Griffith

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Jason D Long

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Kelly A Klapec

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Michelle L Manni

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Vasiliy Sim

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Yukiko Stranger-Jones

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P2860

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

Crystal structure of a 14 bp RNA duplex with non-symmetrical tandem GxU wobble base pairs

A sulfate pocket formed by three GoU pairs in the 0.97 A resolution X-ray structure of a nonameric RNA.

Crystal structure of an RNA duplex r(gugucgcac)(2) with uridine bulges

Crystal structure of the leadzyme at 1.8 A resolution: metal ion binding and the implications for catalytic mechanism and allo site ion regulation

Crystal structure of a group I ribozyme domain: principles of RNA packing

Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing

The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions

A 1.3-A resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation

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15123-15135

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10.1021/BI700736F

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51

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46

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2007-11-30T00:00:00Z

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5801231

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18047298

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nearest neighbour algorithm

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2537471

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