Improved RNA secondary structure prediction by maximizing expected pair accuracy
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RNAstructure: software for RNA secondary structure prediction and analysisTurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequencesTurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknotsImproving the accuracy of predicting secondary structure for aligned RNA sequencesComputational analysis of noncoding RNAsSelf-Folding of Naked Segment 8 Genomic RNA of Influenza A VirusMONSTER v1.1: a tool to extract and search for RNA non-branching structuresDiscovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary StructuresRNA secondary structure analysis using RNAstructureCompaRNA: a server for continuous benchmarking of automated methods for RNA secondary structure predictionDirect updating of an RNA base-pairing probability matrix with marginal probability constraintsGlobal or local? Predicting secondary structure and accessibility in mRNAsMaximum expected accuracy structural neighbors of an RNA secondary structureA range of complex probabilistic models for RNA secondary structure prediction that includes the nearest-neighbor model and moreGeneralized centroid estimators in bioinformaticsEnsemble-based prediction of RNA secondary structures.Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing dataAnalysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.The genus Pseudo-nitzschia (Bacillariophyceae) in a temperate estuary with description of two new species: Pseudo-nitzschia plurisecta sp. nov. and Pseudo-nitzschia abrensis sp. nov.Data-directed RNA secondary structure prediction using probabilistic modeling.Prediction of RNA secondary structure by maximizing pseudo-expected accuracy.Computing the partition function for kinetically trapped RNA secondary structures.PicXAA-R: efficient structural alignment of multiple RNA sequences using a greedy approach.Two ribosome recruitment sites direct multiple translation events within HIV1 Gag open reading frame.Is mitochondrial tRNA(phe) variant m.593T>C a synergistically pathogenic mutation in Chinese LHON families with m.11778G>A?Nucleic acid sequence design via efficient ensemble defect optimization.ProbKnot: fast prediction of RNA secondary structure including pseudoknots.RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction.Analysis of energy-based algorithms for RNA secondary structure prediction.Folding and finding RNA secondary structure.Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures.Positional and neighboring base pair effects on the thermodynamic stability of RNA single mismatchesThe RNA shapes studio.Structural characterization of naturally occurring RNA single mismatches.Reconstructing the origin and transmission dynamics of the 1967-68 foot-and-mouth disease epidemic in the United Kingdom.Structure and stability of RNA/RNA kissing complex: with application to HIV dimerization initiation signalCulture-Independent Study of the Late-Stage of a Bloom of the Toxic Dinoflagellate Ostreopsis cf. ovata: Preliminary Findings Suggest Genetic Differences at the Sub-Species Level and Allow ITS2 Structure Characterization.A classification of bioinformatics algorithms from the viewpoint of maximizing expected accuracy (MEA)Basis for ligand discrimination between ON and OFF state riboswitch conformations: the case of the SAM-I riboswitch.RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data
P2860
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P2860
Improved RNA secondary structure prediction by maximizing expected pair accuracy
description
article científic
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article scientifique
@fr
articolo scientifico
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artigo científico
@pt
bilimsel makale
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scientific article published on 24 August 2009
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Improved RNA secondary structure prediction by maximizing expected pair accuracy
@en
Improved RNA secondary structure prediction by maximizing expected pair accuracy.
@nl
type
label
Improved RNA secondary structure prediction by maximizing expected pair accuracy
@en
Improved RNA secondary structure prediction by maximizing expected pair accuracy.
@nl
prefLabel
Improved RNA secondary structure prediction by maximizing expected pair accuracy
@en
Improved RNA secondary structure prediction by maximizing expected pair accuracy.
@nl
P2093
P2860
P356
P1433
P1476
Improved RNA secondary structure prediction by maximizing expected pair accuracy
@en
P2093
David H Mathews
Jason W Gloor
Zhi John Lu
P2860
P304
P356
10.1261/RNA.1643609
P407
P577
2009-08-24T00:00:00Z