Proteome-wide discovery of evolutionary conserved sequences in disordered regions. - Wikidata - wikimedia - TriplyDB

Proteome-wide discovery of evolutionary conserved sequences in disordered regions.

Proteome-wide discovery of evolutionary conserved sequences in disordered regions.

http://www.wikidata.org/entity/Q36926540

about

Classification of intrinsically disordered regions and proteins Relating sequence encoded information to form and function of intrinsically disordered proteins Physical motif clustering within intrinsically disordered nucleoporin sequences reveals universal functional features Evolution of domain-peptide interactions to coadapt specificity and affinity to functional diversity DoReMi: context-based prioritization of linear motif matches Exhaustive search of linear information encoding protein-peptide recognition Fast and accurate discovery of degenerate linear motifs in protein sequences.A sequence-specific transcription activator motif and powerful synthetic variants that bind Mediator using a fuzzy protein interface.A bioinformatics pipeline to search functional motifs within whole-proteome data: a case study of poxviruses.Recognition of the HIV capsid by the TRIM5α restriction factor is mediated by a subset of pre-existing conformations of the TRIM5α SPRY domain.Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks Prediction and redesign of protein-protein interactions Structural divergence is more extensive than sequence divergence for a family of intrinsically disordered proteins.Snf2 family gene distribution in higher plant genomes reveals DRD1 expansion and diversification in the tomato genome Evaluation of sequence features from intrinsically disordered regions for the estimation of protein function.Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences.The Structure of an NDR/LATS Kinase-Mob Complex Reveals a Novel Kinase-Coactivator System and Substrate Docking Mechanism.Polymorphism Analysis Reveals Reduced Negative Selection and Elevated Rate of Insertions and Deletions in Intrinsically Disordered Protein Regions.Functional Analysis of Kinases and Transcription Factors in Saccharomyces cerevisiae Using an Integrated Overexpression Library CLC anion channel regulatory phosphorylation and conserved signal transduction domains Parallel reorganization of protein function in the spindle checkpoint pathway through evolutionary paths in the fitness landscape that appear neutral in laboratory experiments SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions From sequence and forces to structure, function, and evolution of intrinsically disordered proteins Multiple Weak Linear Motifs Enhance Recruitment and Processivity in SPOP-Mediated Substrate Ubiquitination.The N-terminal basolateral targeting signal unlikely acts alone in the differential trafficking of membrane transporters in MDCK cells.Redefining the BH3 Death Domain as a 'Short Linear Motif'.Protein intrinsic disorder and network connectivity. The case of 14-3-3 proteins.Computational structural analysis of protein interactions and networks.Insights into molecular evolution from yeast genomics.SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions.Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.AUCpreD: proteome-level protein disorder prediction by AUC-maximized deep convolutional neural fields.Phylogenomics-guided discovery of a novel conserved cassette of short linear motifs in BubR1 essential for the spindle checkpoint.In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae.FOXP in Tetrapoda: Intrinsically Disordered Regions, Short Linear Motifs and their evolutionary significance The ABBA motif binds APC/C activators and is shared by APC/C substrates and regulators Selection maintains signaling function of a highly diverged intrinsically disordered region.Molecular principles of human virus protein-protein interactions.Controllability of protein-protein interaction phosphorylation-based networks: Participation of the hub 14-3-3 protein family.The switches.ELM resource: a compendium of conditional regulatory interaction interfaces.

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P2860

Proteome-wide discovery of evolutionary conserved sequences in disordered regions.

http://www.wikidata.org/entity/Q36926540

description

2012 nî lūn-bûn

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2012年の論文

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2012年論文

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2012年論文

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2012年论文

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2012年论文

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2012年论文

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name

Proteome-wide discovery of evolutionary conserved sequences in disordered regions.

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type

label

Proteome-wide discovery of evolutionary conserved sequences in disordered regions.

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Proteome-wide discovery of evolutionary conserved sequences in disordered regions.

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Proteome-wide discovery of evolutionary conserved sequences in disordered regions.

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Alan M Moses

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Alan R Davidson

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Alex N Nguyen Ba

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Brenda J Andrews

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Brian J Yeh

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Dewald van Dyk

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Eric L Weiss

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P2860

Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome

Prediction of protein binding regions in disordered proteins

Short Linear Motifs recognized by SH2, SH3 and Ser/Thr Kinase domains are conserved in disordered protein regions

Logarithmic gap costs decrease alignment accuracy

An automated method for finding molecular complexes in large protein interaction networks

Intrinsically Disordered Proteins in Human Diseases: Introducing the D 2 Concept

Intrinsically unstructured proteins and their functions

Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

Cytoscape: a software environment for integrated models of biomolecular interaction networks

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