Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.
about
Simulating oligomerization at experimental concentrations and long timescales: A Markov state model approachCombinatorial pattern discovery approach for the folding trajectory analysis of a beta-hairpin.His26 protonation in cytochrome c triggers microsecond β-sheet formation and heme exposure: implications for apoptosisFolding of small proteins using constrained molecular dynamicsConformational changes during the nanosecond-to-millisecond unfolding of ubiquitin.Correct folding of an α-helix and a β-hairpin using a polarized 2D torsional potential.Reversible folding simulation by hybrid Hamiltonian replica exchange.Temperature-jump apparatus with Raman detection based on a solid-state tunable (1.80-2.05 microm) kHz optical parametric oscillator laser.Fast protein folding kineticsEnhanced sampling and applications in protein folding in explicit solvent.The interplay of turn formation and hydrophobic interactions on the early kinetic events in protein folding.Hairpin folding rates reflect mutations within and remote from the turn region.Protein folding by distributed computing and the denatured state ensemble.Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy.The intrinsic conformational features of amino acids from a protein coil library and their applications in force field development.Local structure of beta-hairpin isotopomers by FTIR, 2D IR, and ab initio theoryLocal structure formation in simulations of two small proteins.Using thioamides to site-specifically interrogate the dynamics of hydrogen bond formation in β-sheet folding.Light-triggered beta-hairpin folding and unfoldingDehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide foldingMicrosecond folding experiments and simulations: a match is made.High temperature unfolding simulations of the TRPZ1 peptide.Mutational effects on the folding dynamics of a minimized hairpin.PRIMO: A Transferable Coarse-grained Force Field for Proteins.Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries.ABSINTH: a new continuum solvation model for simulations of polypeptides in aqueous solutions.Folding mechanism of β-hairpin trpzip2: heterogeneity, transition state and folding pathways.Understanding the key factors that control the rate of beta-hairpin folding.How quickly can a β-hairpin fold from its transition state?To milliseconds and beyond: challenges in the simulation of protein folding.Ontology of temperature in nonequilibrium systems.Aggregation gatekeeper and controlled assembly of Trpzip β-hairpinsFolding cooperativity in a three-stranded beta-sheet model.Coarse kMC-based replica exchange algorithms for the accelerated simulation of protein folding in explicit solvent.Non-sequence-specific interactions can account for the compaction of proteins unfolded under "native" conditions.Finding pathways between distant local minima.A kMC-MD method with generalized move-sets for the simulation of folding of α-helical and β-stranded peptides.Enthalpic and entropic stages in alpha-helical peptide unfolding, from laser T-jump/UV Raman spectroscopy.How water layers on graphene affect folding and adsorption of TrpZip2.Distinct unfolding and refolding pathways of ribonuclease a revealed by heating and cooling temperature jumps.
P2860
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Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on 12 March 2004
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
@da
vědecký článek
@cs
name
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.
@en
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.
@nl
type
label
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.
@en
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.
@nl
prefLabel
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.
@en
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.
@nl
P2093
P2860
P356
P1476
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy
@en
P2093
Linlin Qiu
Stephen J Hagen
Vijay S Pande
P2860
P304
P356
10.1073/PNAS.0305260101
P407
P577
2004-03-12T00:00:00Z