Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.
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mRNA trans-splicing in gene therapy for genetic diseasesEvolutionary Insights into RNA trans-Splicing in VertebratesHypothesis: Artifacts, Including Spurious Chimeric RNAs with a Short Homologous Sequence, Caused by Consecutive Reverse Transcriptions and Endogenous Random PrimersBiogenesis, identification, and function of exonic circular RNAsChimeric RNAs in cancer and normal physiology.Intergenically Spliced Chimeric RNAs in Cancer.Recurrent chimeric fusion RNAs in non-cancer tissues and cells.Chimeric RNAs generated by intergenic splicing in normal and cancer cells.ChiTaRS 2.1--an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcriptsDiscovering and understanding oncogenic gene fusions through data intensive computational approachesChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?De novo transcriptome assembly of pummelo and molecular marker developmentRepair of rhodopsin mRNA by spliceosome-mediated RNA trans-splicing: a new approach for autosomal dominant retinitis pigmentosa.JAFFA: High sensitivity transcriptome-focused fusion gene detection.PTESFinder: a computational method to identify post-transcriptional exon shuffling (PTES) events.The evolutionary landscape of intergenic trans-splicing events in insectsThe pathogenicity of splicing defects: mechanistic insights into pre-mRNA processing inform novel therapeutic approaches.NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precisionCircular RNA enrichment in platelets is a signature of transcriptome degradationUnscrambling the genomic chaos of osteosarcoma reveals extensive transcript fusion, recurrent rearrangements and frequent novel TP53 aberrationsLessons from non-canonical splicingTranscriptomic analysis of diplomonad parasites reveals a trans-spliced intron in a helicase gene in Giardia.Detecting circular RNAs: bioinformatic and experimental challenges.ChiTaRS-3.1-the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions.The circular RNA circBIRC6 participates in the molecular circuitry controlling human pluripotency.Optimization of trans-Splicing for Huntington's Disease RNA Therapy.Chimeric RNAs and their implications in cancer.Noncoding RNAs in the Regulation of Pluripotency and Reprogramming.Transcriptional-Readthrough RNAs Reflect the Phenomenon of "A Gene Contains Gene(s)" or "Gene(s) within a Gene" in the Human Genome, and Thus Are Not Chimeric RNAs.ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult human tissues.The Trans-Spliced Long Noncoding RNA tsRMST Impedes Human Embryonic Stem Cell Differentiation Through WNT5A-Mediated Inhibition of the Epithelial-to-Mesenchymal Transition.Analysis of human ES cell differentiation establishes that the dominant isoforms of the lncRNAs RMST and FIRRE are circular.
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Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.
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article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 16 October 2013
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Integrative transcriptome sequ ...... ryonic stem cell pluripotency.
@en
Integrative transcriptome sequ ...... ryonic stem cell pluripotency.
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type
label
Integrative transcriptome sequ ...... ryonic stem cell pluripotency.
@en
Integrative transcriptome sequ ...... ryonic stem cell pluripotency.
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Integrative transcriptome sequ ...... ryonic stem cell pluripotency.
@en
Integrative transcriptome sequ ...... ryonic stem cell pluripotency.
@nl
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Integrative transcriptome sequ ...... bryonic stem cell pluripotency
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Chan-Shuo Wu
Cheng-Fu Kao
Ching-Yu Chuang
Trees-Juen Chuang
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10.1101/GR.159483.113
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2013-10-16T00:00:00Z