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A probabilistic model of RNA conformational spaceIdentification of dynamical hinge points of the L1 ligase molecular switchRNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)Molecular dynamics simulations of sarcin-ricin rRNA motif.DNA Aptamers in the Diagnosis and Treatment of Human DiseasesHigh-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNANovel Conformation of an RNA Structural SwitchStructure of an RNA/DNA dodecamer corresponding to the HIV-1 polypurine tract at 1.6 Å resolutionThe building blocks and motifs of RNA architectureStacking in RNA: NMR of Four Tetramers Benchmark Molecular DynamicsDescribing RNA structure by libraries of clustered nucleotide doublets.The impact of base stacking on the conformations and electrostatics of single-stranded DNA.Statistical analysis of RNA backbone.Molecular modeling of nucleic acid structure.Visualizing single-stranded nucleic acids in solution.FR3D: finding local and composite recurrent structural motifs in RNA 3D structuresRNA structural motifs that entail hydrogen bonds involving sugar-phosphate backbone atoms of RNA.Discrete RNA libraries from pseudo-torsional spaceThe nuclear magnetic resonance of CCCC RNA reveals a right-handed helix, and revised parameters for AMBER force field torsions improve structural predictions from molecular dynamics.Recent advances in computational predictions of NMR parameters for the structure elucidation of carbohydrates: methods and limitations.Automated extraction and classification of RNA tertiary structure cyclic motifsCations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozymeAutomatic workflow for the classification of local DNA conformations.Insights into ligand binding to PreQ1 Riboswitch Aptamer from molecular dynamics simulations.Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides.Understanding the Sequence Preference of Recurrent RNA Building Blocks using Quantum Chemistry: The Intrastrand RNA Dinucleotide Platform.Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.Nonparametric clustering for studying RNA conformations.Evaluating and learning from RNA pseudotorsional space: quantitative validation of a reduced representation for RNA structureOptimization of an AMBER force field for the artificial nucleic acid, LNA, and benchmarking with NMR of L(CAAU).The DNA and RNA sugar-phosphate backbone emerges as the key player. An overview of quantum-chemical, structural biology and simulation studies.MD simulations of ligand-bound and ligand-free aptamer: molecular level insights into the binding and switching mechanism of the add A-riboswitchIdentification and conformational analysis of putative microRNAs in Maruca vitrata (Lepidoptera: Pyralidae).Large-Scale Analysis of 48 DNA and 48 RNA Tetranucleotides Studied by 1 μs Explicit-Solvent Molecular Dynamics SimulationsDNA conformations and their sequence preferences.Revision of AMBER Torsional Parameters for RNA Improves Free Energy Predictions for Tetramer Duplexes with GC and iGiC Base Pairs.Reparameterization of RNA chi Torsion Parameters for the AMBER Force Field and Comparison to NMR Spectra for Cytidine and Uridine.The identification of novel RNA structural motifs using COMPADRES: an automated approach to structural discovery.AUTOMATIC STRUCTURE INTERPRETATION OF SINGLE PARTICLE CRYO-ELECTRON MICROSCOPY: FROM IMAGES TO PSUEDO-ATOMIC MODELS.The role of RNA conformation in RNA-protein recognition.
P2860
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P2860
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on 11 March 2004
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
@da
vědecký článek
@cs
name
RNA conformational classes.
@en
RNA conformational classes.
@nl
type
label
RNA conformational classes.
@en
RNA conformational classes.
@nl
prefLabel
RNA conformational classes.
@en
RNA conformational classes.
@nl
P2860
P356
P1476
RNA conformational classes.
@en
P2093
Bohdan Schneider
Zdenek Morávek
P2860
P304
P356
10.1093/NAR/GKH333
P407
P577
2004-03-11T00:00:00Z