TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
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Transposable element detection from whole genome sequence dataComparative assessment of methods for the fusion transcripts detection from RNA-Seq dataAccurate de novo and transmitted indel detection in exome-capture data using microassembly.Identification of copy number variants in whole-genome data using Reference Coverage Profiles.Indel variant analysis of short-read sequencing data with Scalpel.Expanding the computational toolbox for mining cancer genomes.ABRA: improved coding indel detection via assembly-based realignment.Spatial and temporal diversity in genomic instability processes defines lung cancer evolution.MindTheGap: integrated detection and assembly of short and long insertionsThe challenge of small-scale repeats for indel discovery.RET fusion as a novel driver of medullary thyroid carcinomaWhole genome sequence of the Treponema pallidum subsp. endemicum strain Bosnia A: the genome is related to yaws treponemes but contains few loci similar to syphilis treponemes.ClinSeK: a targeted variant characterization framework for clinical sequencing.Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.Wham: Identifying Structural Variants of Biological ConsequenceScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assemblyTumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple MetastasesDiscovery of large genomic inversions using long range informationDiscovery and characterization of Alu repeat sequences via precise local read assembly.Structural Variant Detection by Large-scale Sequencing Reveals New Evolutionary Evidence on Breed Divergence between Chinese and European Pigs.Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes.The comparative landscape of duplications in Heliconius melpomene and Heliconius cydno.novoBreak: local assembly for breakpoint detection in cancer genomes.Making the difference: integrating structural variation detection tools.A decade of structural variants: description, history and methods to detect structural variation.HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies.Seeksv: an accurate tool for somatic structural variation and virus integration detection.PopIns: population-scale detection of novel sequence insertions.Genome-wide analysis of structural variants reveals genetic differences in Chinese pigs.GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly.Genome-wide mapping of large deletions and their population-genetic properties in dairy cattle.SvABA: genome-wide detection of structural variants and indels by local assembly.The Origins and Vulnerabilities of Two Transmissible Cancers in Tasmanian Devils.iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.The Role of Transposable Elements in Speciation.
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TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 04 December 2013
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
@en
TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
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type
label
TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
@en
TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
@nl
prefLabel
TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
@en
TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
@nl
P2093
P2860
P356
P1433
P1476
TIGRA: a targeted iterative graph routing assembler for breakpoint assembly.
@en
P2093
P2860
P304
P356
10.1101/GR.162883.113
P577
2013-12-04T00:00:00Z