Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information.
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Sequence co-evolutionary information is a natural partner to minimally-frustrated models of biomolecular dynamicsCauses of evolutionary rate variation among protein sitesFrom residue coevolution to protein conformational ensembles and functional dynamics.Large-Scale Conformational Transitions and Dimerization Are Encoded in the Amino-Acid Sequences of Hsp70 ChaperonesConstructing sequence-dependent protein models using coevolutionary information.Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis.P2CS: updates of the prokaryotic two-component systems database.Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1.Inter-Protein Sequence Co-Evolution Predicts Known Physical Interactions in Bacterial Ribosomes and the Trp OperonMethods for SAXS-based structure determination of biomolecular complexes.Quantum coupled mutation finder: predicting functionally or structurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming.Capturing coevolutionary signals inrepeat proteins.SMOG 2: A Versatile Software Package for Generating Structure-Based Models.Dimeric interactions and complex formation using direct coevolutionary couplings.Inferring repeat-protein energetics from evolutionary information.A Combined Computational and Genetic Approach Uncovers Network Interactions of the Cyanobacterial Circadian ClockInferring interaction partners from protein sequences.Connecting the Sequence-Space of Bacterial Signaling Proteins to Phenotypes Using Coevolutionary Landscapes.Elucidating the druggable interface of protein-protein interactions using fragment docking and coevolutionary analysis.Conservation of coevolving protein interfaces bridges prokaryote-eukaryote homologies in the twilight zone.Integrated strategy reveals the protein interface between cancer targets Bcl-2 and NAF-1.A Symphony of Cyclases: Specificity in Diguanylate Cyclase Signaling.Coevolutionary Landscape of Kinase Family Proteins: Sequence Probabilities and Functional Motifs.The phosphorelay signal transduction system in Candida glabrata: an in silico analysis.Inter-residue, inter-protein and inter-family coevolution: bridging the scales.Biomolecular coevolution and its applications: Going from structure prediction toward signaling, epistasis, and function.Predicting protein folding rate change upon point mutation using residue-level coevolutionary information.Shape Transitions and Chiral Symmetry Breaking in the Energy Landscape of the Mitotic Chromosome.Characterization of C-ring component assembly in flagellar motors from amino acid coevolution.Designing bacterial signaling interactions with coevolutionary landscapes
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Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information.
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 21 January 2014
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Toward rationally redesigning ...... ng coevolutionary information.
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Toward rationally redesigning ...... ng coevolutionary information.
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type
label
Toward rationally redesigning ...... ng coevolutionary information.
@en
Toward rationally redesigning ...... ng coevolutionary information.
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Toward rationally redesigning ...... ng coevolutionary information.
@en
Toward rationally redesigning ...... ng coevolutionary information.
@nl
P2093
P2860
P356
P1476
Toward rationally redesigning ...... ng coevolutionary information.
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P2093
Faruck Morcos
Herbert Levine
Ryan R Cheng
P2860
P304
P356
10.1073/PNAS.1323734111
P407
P50
P577
2014-01-21T00:00:00Z