DOOR 2.0: presenting operons and their functions through dynamic and integrated views. - Wikidata - wikimedia - TriplyDB

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

http://www.wikidata.org/entity/Q37661942

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Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli The power of operon rearrangements for predicting functional associations Molecular characterization of novel pyridoxal-5′-phosphate-dependent enzymes from the human microbiome Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans Identification of Preferred DNA-Binding Sites for the Thermus thermophilus Transcriptional Regulator SbtR by the Combinatorial Approach REPSA Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis Finding approximate gene clusters with Gecko 3.Analysis of strand-specific RNA-seq data using machine learning reveals the structures of transcription units in Clostridium thermocellum ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa Gene Expression Data with Denoising Autoencoders Illuminates Microbe-Host Interactions.Comparative Genomics and Transcriptional Analysis of Flavobacterium columnare Strain ATCC 49512.RegA Plays a Key Role in Oxygen-Dependent Establishment of Persistence and in Isocitrate Lyase Activity, a Critical Determinant of In vivo Brucella suis Pathogenicity.The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq.DMINDA: an integrated web server for DNA motif identification and analyses BsmR degrades c-di-GMP to modulate biofilm formation of nosocomial pathogen Stenotrophomonas maltophilia.Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer.Elucidation of operon structures across closely related bacterial genomes.Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea Transcriptional Analysis of the Conjugal Transfer Genes of Rickettsia bellii RML 369-C.Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors.Identification, Functional Characterization and Regulon Prediction of a Novel Two Component System Comprising BAS0540-BAS0541 of Bacillus anthracis.An integrative and applicable phylogenetic footprinting framework for cis-regulatory motifs identification in prokaryotic genomes.Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity Competitive Growth Enhances Conditional Growth Mutant Sensitivity to Antibiotics and Exposes a Two-Component System as an Emerging Antibacterial Target in Burkholderia cenocepacia Overexpressed Proteins in Hypervirulent Clade 8 and Clade 6 Strains of Escherichia coli O157:H7 Compared to E. coli O157:H7 EDL933 Clade 3 Strain.Genome-wide identification and evaluation of constitutive promoters in streptomycetes.Revisiting operons: an analysis of the landscape of transcriptional units in E. coli Bacterial regulon modeling and prediction based on systematic cis regulatory motif analyses.Investigating Evolutionary Dynamics of RHA1 Operons.Systematic Mutational Analysis of Histidine Kinase Genes in the Nosocomial Pathogen Stenotrophomonas maltophilia Identifies BfmAK System Control of Biofilm Development.Leveraging genome-wide datasets to quantify the functional role of the anti-Shine-Dalgarno sequence in regulating translation efficiency.Genome-wide primary transcriptome analysis of H2-producing archaeon Thermococcus onnurineus NA1.Global mapping transcriptional start sites revealed both transcriptional and post-transcriptional regulation of cold adaptation in the methanogenic archaeon Methanolobus psychrophilus Following the Footsteps of Chlamydial Gene Regulation.Operon Gene Order Is Optimized for Ordered Protein Complex Assembly.Increased ParB level affects expression of stress response, adaptation and virulence operons and potentiates repression of promoters adjacent to the high affinity binding sites parS3 and parS4 in Pseudomonas aeruginosa.DMINDA 2.0: integrated and systematic views of regulatory DNA motif identification and analyses.SeqTU: A Web Server for Identification of Bacterial Transcription Units.Increased Pilus Production Conferred by a Naturally Occurring Mutation Alters Host-Pathogen Interaction in Favor of Carriage in Streptococcus pyogenes.Computational operon prediction in whole-genomes and metagenomes.Comprehensive Transcriptome Profiles of Streptococcus mutans UA159 Map Core Streptococcal Competence Genes.

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P2860

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

http://www.wikidata.org/entity/Q37661942

description

2013 nî lūn-bûn

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2013年の論文

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2013年学术文章

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2013年学术文章

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2013年学术文章

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2013年学术文章

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2013年学术文章

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2013年學術文章

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2013年學術文章

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2013年學術文章

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name

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

@en

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

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type

label

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

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DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

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prefLabel

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

@en

DOOR 2.0: presenting operons and their functions through dynamic and integrated views.

@nl

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Nucleic Acids Research

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DOOR 2.0: presenting operons and their functions through dynamic and integrated views

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P2093

Chuan Zhou

http://www.w3.org/2001/XMLSchema#string

Fenglou Mao

http://www.w3.org/2001/XMLSchema#string

Hanyuan Zhang

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Jincai Yang

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Wei Lai

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Xin Chen

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Xizeng Mao

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Ying Xu

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P2860

Operons in Escherichia coli: genomic analyses and predictions

ODB: a database for operon organizations, 2011 update

RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes

ODB: a database of operons accumulating known operons across multiple genomes.

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

WebLogo: A Sequence Logo Generator

JBrowse: a next-generation genome browser

MEME SUITE: tools for motif discovery and searching

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.

The life-cycle of operons

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10.1093/NAR/GKT1048

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42

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