Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD).
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Comprehensive Analysis of the Naturally Processed Peptide Repertoire: Differences between HLA-A and B in the ImmunopeptidomeIon Activation Methods for Peptides and ProteinsMass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen PresentationComplementary IMAC enrichment methods for HLA-associated phosphopeptide identification by mass spectrometry.Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling.Extended O-GlcNAc on HLA Class-I-Bound Peptides.Unsupervised HLA Peptidome Deconvolution Improves Ligand Prediction Accuracy and Predicts Cooperative Effects in Peptide-HLA Interactions.Toward Understanding the Essence of Post-Translational Modifications for the Mycobacterium tuberculosis ImmunoproteomeThe melting pot of the MHC II peptidomeNaturally processed non-canonical HLA-A*02:01 presented peptides.Early Kinetics of the HLA Class I-Associated Peptidome of MVA.HIVconsv-Infected Cells.An Optimized Informatics Pipeline for Mass Spectrometry-Based Peptidomics.Implementation of Activated Ion Electron Transfer Dissociation on a Quadrupole-Orbitrap-Linear Ion Trap Hybrid Mass SpectrometerThe T210M Substitution in the HLA-a*02:01 gp100 Epitope Strongly Affects Overall Proteasomal Cleavage Site Usage and Antigen Processing.Analysis of Major Histocompatibility Complex (MHC) Immunopeptidomes Using Mass Spectrometry.Sampling From the Proteome to the Human Leukocyte Antigen-DR (HLA-DR) Ligandome Proceeds Via High SpecificityAnalysis of Major Histocompatibility Complex-Bound HIV Peptides Identified from Various Cell Types Reveals Common Nested Peptides and Novel T Cell Responses.Maturing Glycoproteomics Technologies Provide Unique Structural Insights into the N-glycoproteome and Its Regulation in Health and Disease.Minor histocompatibility antigens: past, present, and future.Lymphocyte repertoire selection and intracellular self/non-self-discrimination: historical overview.The Human Leukocyte Antigen (HLA)-B27 Peptidome in Vivo, in Spondyloarthritis-susceptible HLA-B27 Transgenic Rats and the Effect of Erap1 Deletion.Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity.A Molecular Basis for the Presentation of Phosphorylated Peptides by HLA-B Antigens.A large fraction of HLA class I ligands are proteasome-generated spliced peptides.I've got algorithm: predicting tumor and autoimmune peptide targets for CD8+ T cells.MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomicsPhosphoproteomics with Activated Ion Electron Transfer Dissociation.Exploration of peptides bound to MHC class I molecules in melanoma.Current tools for predicting cancer-specific T cell immunity.Building proteomic tool boxes to monitor MHC class I and class II peptides.Analysis of the CD8+ T cell anti-HIV activity in heterologous cell co-cultures reveals the benefit of multiple HLA class I matches.Identification of Fungal T Cell Epitopes by Mass Spectrometry-Based Proteomics.Structural and Nonstructural Viral Proteins Are Targets of T-Helper Immune Response against Human Respiratory Syncytial Virus.Deciphering the human antigenome.High-sensitivity HLA class I peptidome analysis enables a precise definition of peptide motifs and the identification of peptides from cell lines and patients' sera.Facilitating protein disulfide mapping by a combination of pepsin digestion, electron transfer higher energy dissociation (EThcD), and a dedicated search algorithm SlinkS.The SysteMHC Atlas project.Comparative profiling of HLA-DR and HLA-DQ associated factor VIII peptides presented by monocyte-derived dendritic cells.Mass spectrometric de novo sequencing of natural non-tryptic peptides: comparing peculiarities of collision-induced dissociation (CID) and high energy collision dissociation (HCD).The role of mass spectrometry and proteogenomics in the advancement of HLA epitope prediction.
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Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD).
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 10 March 2014
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Expanding the detectable HLA p ...... ollision dissociation (EThcD).
@en
Expanding the detectable HLA p ...... -energy collision dissociation
@nl
type
label
Expanding the detectable HLA p ...... ollision dissociation (EThcD).
@en
Expanding the detectable HLA p ...... -energy collision dissociation
@nl
prefLabel
Expanding the detectable HLA p ...... ollision dissociation (EThcD).
@en
Expanding the detectable HLA p ...... -energy collision dissociation
@nl
P2093
P2860
P356
P1476
Expanding the detectable HLA p ...... ollision dissociation (EThcD).
@en
P2093
Ad P J M de Jong
Cécile A C M van Els
Geert P M Mommen
Hugo D Meiring
Jacqueline van Gaans-van den Brink
P2860
P304
P356
10.1073/PNAS.1321458111
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P577
2014-03-10T00:00:00Z