DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
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Transversions have larger regulatory effects than transitions.Transcription factor family-specific DNA shape readout revealed by quantitative specificity models.DNA sequence+shape kernel enables alignment-free modeling of transcription factor binding.Mocap: large-scale inference of transcription factor binding sites from chromatin accessibilityDNA Shape Features Improve Transcription Factor Binding Site Predictions In Vivo.Correspondence: Reply to 'DNA shape is insufficient to explain binding'.Genome-wide prediction of minor-groove electrostatic potential enables biophysical modeling of protein-DNA binding.Deconvolving sequence features that discriminate between overlapping regulatory annotations.Expanding the repertoire of DNA shape features for genome-scale studies of transcription factor binding.Probing instructions for expression regulation in gene nucleotide compositions.Binding of high mobility group A proteins to the mammalian genome occurs as a function of AT-content.Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein-DNA binding.The G-Box Transcriptional Regulatory Code in Arabidopsis.Relationship between histone modifications and transcription factor binding is protein family specific.Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations.Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures.Predicting double-strand DNA breaks using epigenome marks or DNA at kilobase resolution.Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding.The interaction landscape between transcription factors and the nucleosome
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DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
description
2015 nî lūn-bûn
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DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
@en
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
@nl
type
label
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
@en
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
@nl
prefLabel
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
@en
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
@nl
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DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
@en
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Renato Paro
Tianyin Zhou
Tsu-Pei Chiu
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10.1093/BIOINFORMATICS/BTV735
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2015-12-14T00:00:00Z