Exploring the counterion atmosphere around DNA: what can be learned from molecular dynamics simulations?
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Similarities and differences in interaction of K+ and Na+ with condensed ordered DNA. A molecular dynamics computer simulation studyThe contribution of phosphate-phosphate repulsions to the free energy of DNA bending.A coarse graining approach to determine nucleic acid structures from small angle neutron scattering profiles in solution.Physicochemical Properties of Ion Pairs of Biological MacromoleculesClose encounters with DNAMajor Challenges for the Modern Chemistry in Particular and Science in GeneralComputational exploration of mobile ion distributions around RNA duplexAnalyzing ion distributions around DNA.Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNAThe ABCs of molecular dynamics simulations on B-DNA, circa 2012.On the molecular basis of uracil recognition in DNA: comparative study of T-A versus U-A structure, dynamics and open base pair kinetics.Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozymeIon distributions around left- and right-handed DNA and RNA duplexes: a comparative study.Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics.Extended molecular dynamics of a c-kit promoter quadruplex.Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.Cation-Anion Interactions within the Nucleic Acid Ion Atmosphere Revealed by Ion Counting.Multiscale methods for computational RNA enzymology.Quantitative analysis of monovalent counterion binding to random-sequence, double-stranded DNA using the replacement ion method.Ion motions in molecular dynamics simulations on DNA.Ion counting from explicit-solvent simulations and 3D-RISM.A theoretical view of protein dynamics.Molecular modeling of nucleic Acid structure: electrostatics and solvation.Balancing the interactions of ions, water, and DNA in the Drude polarizable force field.Does Cation Size Affect Occupancy and Electrostatic Screening of the Nucleic Acid Ion Atmosphere?Comparison of monovalent and divalent ion distributions around a DNA duplex with molecular dynamics simulation and a Poisson-Boltzmann approach.Assessing the performance of implicit solvation models at a nucleic acid surface.Theoretical study of the Hoogsteen-Watson-Crick junctions in DNA.DNA and lipid bilayers: self-assembly and insertion.Effect of initial ion positions on the interactions of monovalent and divalent ions with a DNA duplex as revealed with atomistic molecular dynamics simulations.Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations.Dynamic behaviour of the silica-water-bio electrical double layer in the presence of a divalent electrolyte.Biomolecular Simulations Under Realistic Macroscopic Salt Conditions.Insight into nucleic acid counterion interactions from inside molecular dynamics simulations is “worth its salt”
P2860
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P2860
Exploring the counterion atmosphere around DNA: what can be learned from molecular dynamics simulations?
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
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2004年论文
@zh-cn
name
Exploring the counterion atmos ...... olecular dynamics simulations?
@en
type
label
Exploring the counterion atmos ...... olecular dynamics simulations?
@en
prefLabel
Exploring the counterion atmos ...... olecular dynamics simulations?
@en
P2093
P2860
P1433
P1476
Exploring the counterion atmos ...... olecular dynamics simulations?
@en
P2093
Charles A Laughton
Elena Cubero
Manuel Rueda
Modesto Orozco
P2860
P304
P356
10.1529/BIOPHYSJ.104.040451
P407
P577
2004-08-01T00:00:00Z