Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential.
about
Single-molecule views of MutS on mismatched DNA.Retroviral intasomes search for a target DNA by 1D diffusion which rarely results in integrationSliding of proteins non-specifically bound to DNA: Brownian dynamics studies with coarse-grained protein and DNA modelsIntegrating multi-scale data on homologous recombination into a new recognition mechanism based on simulations of the RecA-ssDNA/dsDNA structureConformational and thermodynamic changes of the repressor/DNA operator complex upon monomerization shed new light on regulation mechanisms of bacterial resistance against -lactam antibioticsMassively parallel measurements of molecular interaction kinetics on a microfluidic platform.Twist-open mechanism of DNA damage recognition by the Rad4/XPC nucleotide excision repair complexProbing the informational and regulatory plasticity of a transcription factor DNA-binding domainAn integrated model of transcription factor diffusion shows the importance of intersegmental transfer and quaternary protein structure for target site finding.A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.How DNA coiling enhances target localization by proteinsDynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6.The influence of volume exclusion by chromatin on the time required to find specific DNA binding sites by diffusionSequence-dependent sliding kinetics of p53Single-molecule imaging reveals target-search mechanisms during DNA mismatch repair.TRF1 and TRF2 use different mechanisms to find telomeric DNA but share a novel mechanism to search for protein partners at telomeres.Collaborative dynamic DNA scanning by nucleotide excision repair proteins investigated by single- molecule imaging of quantum-dot-labeled proteins.TRBP ensures efficient Dicer processing of precursor microRNA in RNA-crowded environments.Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data.Enhancer responses to similarly distributed antagonistic gradients in developmentFrom biophysics to evolutionary genetics: statistical aspects of gene regulation.Computational models for large-scale simulations of facilitated diffusionDNA polymerase β uses its lyase domain in a processive search for DNA damage.Diffusion of the restriction nuclease EcoRI along DNA.Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.Compartmentalization by directional gene expression.The dynamics of the monomeric restriction endonuclease BcnI during its interaction with DNATethered-hopping model for protein-DNA binding and unbinding based on Sox2-Oct1-Hoxb1 ternary complex simulations.On the Possibility of Facilitated Diffusion of Dendrimers Along DNA.Self-consistent theory of transcriptional control in complex regulatory architectures.Dynamic strategies for target-site search by DNA-binding proteins.Nonspecifically bound proteins spin while diffusing along DNA.Biophysical characterization of DNA binding from single molecule force measurementsFirst-passage time analysis of a one-dimensional diffusion-reaction model: application to protein transport along DNA.Quantitative models for accelerated protein dissociation from nucleosomal DNA.Target site localization by site-specific, DNA-binding proteins.Target search of N sliding proteins on a DNASystem size reduction in stochastic simulations of the facilitated diffusion mechanism.Direct observation of TALE protein dynamics reveals a two-state search mechanismHow proteins search for their specific sites on DNA: the role of DNA conformation
P2860
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P2860
Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
@zh
2004年论文
@zh-cn
name
Kinetics of protein-DNA intera ...... sequence-dependent potential.
@en
type
label
Kinetics of protein-DNA intera ...... sequence-dependent potential.
@en
prefLabel
Kinetics of protein-DNA intera ...... sequence-dependent potential.
@en
P2860
P1433
P1476
Kinetics of protein-DNA intera ...... sequence-dependent potential.
@en
P2093
Leonid A Mirny
Michael Slutsky
P2860
P304
P356
10.1529/BIOPHYSJ.104.050765
P407
P577
2004-10-01T00:00:00Z
P5875
P698
P818
q-bio/0402005