How proteins search for their specific sites on DNA: the role of DNA conformation
about
The innate immune sensor IFI16 recognizes foreign DNA in the nucleus by scanning along the duplex.A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.How DNA coiling enhances target localization by proteinsSequence-dependent sliding kinetics of p53Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data.Polyamine sharing between tubulin dimers favours microtubule nucleation and elongation via facilitated diffusion.Computational models for large-scale simulations of facilitated diffusionTethered-hopping model for protein-DNA binding and unbinding based on Sox2-Oct1-Hoxb1 ternary complex simulations.Dynamic strategies for target-site search by DNA-binding proteins.Biophysical characterization of DNA binding from single molecule force measurementsProtein-DNA binding in the absence of specific base-pair recognitionModeling Viral Capsid Assembly.Lesion search and recognition by thymine DNA glycosylase revealed by single molecule imaging.Theoretical and computational modeling of target-site search kinetics in vitro and in vivoHow gene order is influenced by the biophysics of transcription regulation.Dancing on DNA: kinetic aspects of search processes on DNACrystal structure and DNA binding activity of a PadR family transcription regulator from hypervirulent Clostridium difficile R20291.Influence of quasi-specific sites on kinetics of target DNA search by a sequence-specific DNA-binding protein.Spatial effects on the speed and reliability of protein-DNA search.Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.Are DNA transcription factor proteins maxwellian demons?Facilitated diffusion with DNA coiling.A mathematical model for scanning and catalysis on single-stranded DNA, illustrated with activation-induced deoxycytidine deaminaseHow do proteins locate specific targets in DNA?Accelerated search kinetics mediated by redox reactions of DNA repair enzymesTranscription-factor binding and sliding on DNA studied using micro- and macroscopic models.Single molecule approaches to transcription factor kinetics in living cells.Physics of protein-DNA interactions: mechanisms of facilitated target search.Nuclear magnetic resonance analysis of protein-DNA interactions.Fractal nature of protein surface roughness: a note on quantification of change of surface roughness in active sites, before and after binding.Physical limits on cooperative protein-DNA binding and the kinetics of combinatorial transcription regulation.Proteins Recognizing DNA: Structural Uniqueness and Versatility of DNA-Binding Domains in Stem Cell Transcription Factors.Physical constraints determine the logic of bacterial promoter architectures.Rad4 recognition-at-a-distance: Physical basis of conformation-specific anomalous diffusion of DNA repair proteins.Extracting enzyme processivity from kinetic assays.Obstacles may facilitate and direct DNA search by proteins.Real sequence effects on the search dynamics of transcription factors on DNA.Investigating the Influence of Magnesium Ions on p53-DNA Binding Using Atomic Force Microscopy.Signal focusing through active transport.The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion
P2860
Q27300264-3C48CD04-1888-4506-8024-62771120C5E8Q30477242-A93AB615-F750-4799-B5A8-D2856C53619FQ30484241-AC3BCCC1-1C0F-448D-9134-748FA1A49A8FQ30525788-7363C069-CC58-4C68-A698-05E30D78798EQ30994296-7E3032AC-DD04-46B5-8396-295A029AE919Q33396960-B784A11D-6A42-45C3-B897-F95CF5A66E16Q33556999-13239117-DDC5-4432-8CB9-90A3F9238478Q33767656-7718377E-CA2A-48BA-9328-34928FD3C72BQ33908429-8B01B301-EAF2-479F-BD0F-7F906DA103DDQ34091700-B012AB4E-041B-41F3-9A2B-F57F9AA26AB5Q34661144-523D02D6-359D-4A26-9983-13F69F04D30CQ35052591-A9B2A77E-0906-4A4C-B4A2-F4DFC703D3ECQ35171647-63B2A29C-9B31-4381-860C-BC80F46044D4Q35218272-8E2E6944-DA1A-4CD2-A47A-21C715003DD8Q35956720-3BEA63EF-C725-4DDC-94A2-1C5FE7FE9047Q36110835-5F927A37-0BEE-4080-AE3B-515425D737E8Q36156456-10EEA993-3055-423E-9ADC-9D68E00B87C1Q36272461-9C3BEA5B-2E1A-4735-8B89-DCE63277F3E5Q36740092-CB183A13-CF2F-4F0D-886C-74D51FDD2D80Q36777856-21ADE4DD-5F93-452B-BE10-F64109949544Q36783711-A0B9FB54-6AF9-4D8C-A165-4CC56D291345Q37208544-A99A7231-7114-4C8F-B547-A4AB1B36A97CQ37226213-684AE3BE-E1E7-4A07-BD4E-336051506AC9Q37262523-B4719F7A-B0B5-4618-B117-37F3A30005FBQ37265699-1BCE306B-9214-4254-8A6A-13ED86A3D71AQ37377471-04654703-DD98-46AE-B49A-E55F1ED6E9CBQ37635330-E886357E-4F38-47C2-99EF-BC17FB5DC9A4Q37813036-6B9FB6EF-BE8B-4F81-AAB8-2B3EDDA90C49Q37851243-B489DF28-9827-47A3-8DA7-F4F85010D042Q38092805-181925D8-2422-4DB7-8E95-4BC4BB4A86C7Q38598069-501E8198-0B1E-440F-8576-107D09AE6569Q38649536-079813AA-8560-4801-B863-3A60D4AAA04EQ38735778-63810C5B-7F66-47CB-B72B-61864C7FC533Q39035113-AD0AB0A0-D190-4B48-8124-6E547212982EQ40208295-0C1A594A-768D-4C73-9619-16042F1E2897Q40495004-CD8C7BA8-8BB0-4802-B3B3-0C43B101871BQ40995655-D4A3C34F-E287-4025-93CA-F25F9526DA47Q41183480-ECEDE41B-7FA7-4386-9D5E-80561224C956Q41482652-510739E6-EF51-4444-A420-DC08ECC4F3E3Q41902804-F286C36B-F909-4569-9A7C-16F4F6F97DE5
P2860
How proteins search for their specific sites on DNA: the role of DNA conformation
description
2006 nî lūn-bûn
@nan
2006 թուականի Փետրուարին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի փետրվարին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
How proteins search for their specific sites on DNA: the role of DNA conformation
@ast
How proteins search for their specific sites on DNA: the role of DNA conformation
@en
How proteins search for their specific sites on DNA: the role of DNA conformation
@nl
type
label
How proteins search for their specific sites on DNA: the role of DNA conformation
@ast
How proteins search for their specific sites on DNA: the role of DNA conformation
@en
How proteins search for their specific sites on DNA: the role of DNA conformation
@nl
prefLabel
How proteins search for their specific sites on DNA: the role of DNA conformation
@ast
How proteins search for their specific sites on DNA: the role of DNA conformation
@en
How proteins search for their specific sites on DNA: the role of DNA conformation
@nl
P2093
P2860
P1433
P1476
How proteins search for their specific sites on DNA: the role of DNA conformation
@en
P2093
A Yu Grosberg
B I Shklovskii
P2860
P304
P356
10.1529/BIOPHYSJ.105.078162
P407
P577
2006-02-03T00:00:00Z
P5875
P698
P818
q-bio/0510043