An analysis of core deformations in protein superfamilies.
about
Molecular dynamics simulations: advances and applicationsThe interface of protein structure, protein biophysics, and molecular evolutionCrystal structure of unliganded influenza B virus hemagglutinin.The overlap of small molecule and protein binding sites within families of protein structuresElastic network models capture the motions apparent within ensembles of RNA structuresParallel dynamics and evolution: Protein conformational fluctuations and assembly reflect evolutionary changes in sequence and structure.SABERTOOTH: protein structural alignment based on a vectorial structure representation.Method for identification of rigid domains and hinge residues in proteins based on exhaustive enumeration.Comparison of molecular dynamics and superfamily spaces of protein domain deformation.Comparison of the Internal Dynamics of Metalloproteases Provides New Insights on Their Function and Evolution.JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories.An analysis of the influence of protein intrinsic dynamical properties on its thermal unfolding behavior.Effects of point mutations on protein structure are nonexponentially distributed.Structural dynamics flexibility informs function and evolution at a proteome scale.WEBnm@ v2.0: Web server and services for comparing protein flexibilityMAVENs: motion analysis and visualization of elastic networks and structural ensembles.Visualisation of variable binding pockets on protein surfaces by probabilistic analysis of related structure sets.Evolution of oligomeric state through allosteric pathways that mimic ligand bindingCoarse-grained normal mode analysis in structural biology.Evolutionary Conserved Positions Define Protein Conformational DiversitySimilarity in Shape Dictates Signature Intrinsic Dynamics Despite No Functional Conservation in TIM Barrel Enzymes.Revealing an outward-facing open conformational state in a CLC Cl(-)/H(+) exchange transporterCoarse-grained models reveal functional dynamics--I. Elastic network models--theories, comparisons and perspectivesGlobal dynamics of proteins: bridging between structure and function.Principal component analysis: a method for determining the essential dynamics of proteins.A theoretical view of protein dynamics.Adaptability of protein structures to enable functional interactions and evolutionary implications.On the analysis and comparison of conformer-specific essential dynamics upon ligand binding to a protein.Comparison of intrinsic dynamics of cytochrome p450 proteins using normal mode analysis.On the functional significance of soft modes predicted by coarse-grained models for membrane proteins.Modeling backbone flexibility to achieve sequence diversity: the design of novel alpha-helical ligands for Bcl-xL.Phylogenetic and biological significance of evolutionary elements from metazoan mitochondrial genomes.The critical role of the loops of triosephosphate isomerase for its oligomerization, dynamics, and functionality.Close correspondence between the motions from principal component analysis of multiple HIV-1 protease structures and elastic network modes.Molecular insights on TNKS1/TNKS2 and inhibitor-IWR1 interactions.Structural and dynamic determinants of ligand binding and regulation of cyclin-dependent kinase 5 by pathological activator p25 and inhibitory peptide CIP.oGNM: online computation of structural dynamics using the Gaussian Network Model.Characterizing protein motions from structure.In silico structure-function analysis of E. cloacae nitroreductase.In memoriam. Angel Ramírez Ortiz (1966-2008).
P2860
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P2860
An analysis of core deformations in protein superfamilies.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
@zh
2004年论文
@zh-cn
name
An analysis of core deformations in protein superfamilies.
@en
type
label
An analysis of core deformations in protein superfamilies.
@en
prefLabel
An analysis of core deformations in protein superfamilies.
@en
P2093
P2860
P1433
P1476
An analysis of core deformations in protein superfamilies.
@en
P2093
Alejandra Leo-Macias
Angel R Ortiz
Dmitry Lupyan
Pedro Lopez-Romero
P2860
P304
P356
10.1529/BIOPHYSJ.104.052449
P407
P577
2004-11-12T00:00:00Z