RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12 - Wikidata - wikimedia - TriplyDB

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

http://www.wikidata.org/entity/Q40403678

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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families PhyloScan: identification of transcription factor binding sites using cross-species evidence The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms Escherichia coli K-12: a cooperatively developed annotation snapshot--2005 DBD: a transcription factor prediction database.Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs STRING: known and predicted protein-protein associations, integrated and transferred across organisms Transcriptional interference--a crash course Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons.EcoCyc: a comprehensive database resource for Escherichia coli GANN: genetic algorithm neural networks for the detection of conserved combinations of features in DNA Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach Gene fusions and gene duplications: relevance to genomic annotation and functional analysis Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli Protein-DNA binding specificity predictions with structural models Limitations and potentials of current motif discovery algorithms.The activity reaction core and plasticity of metabolic networks Phydbac "Gene Function Predictor": a gene annotation tool based on genomic context analysis.Phylogenetic detection of conserved gene clusters in microbial genomes.RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions The comprehensive updated regulatory network of Escherichia coli K-12.ODB: a database of operons accumulating known operons across multiple genomes.Prokaryotic genome regulation: a revolutionary paradigm Minimum information requested in the annotation of biochemical models (MIRIAM)Matrix formalism to describe functional states of transcriptional regulatory systems.MISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequences Defining the plasticity of transcription factor binding sites by Deconstructing DNA consensus sequences: the PhoP-binding sites among gamma/enterobacteria.Operon information improves gene expression estimation for cDNA microarrays.Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data.A classification based framework for quantitative description of large-scale microarray data.More robust detection of motifs in coexpressed genes by using phylogenetic information.Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress.EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences Coding limits on the number of transcription factors Variable coordination of cotranscribed genes in Escherichia coli following antisense repression The correlation between architecture and mRNA abundance in the genetic regulatory network of Escherichia coli Selection against spurious promoter motifs correlates with translational efficiency across bacteria

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RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

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Nucleic Acids Research

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RegulonDB (version 4.0): trans ...... tions in Escherichia coli K-12

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Agustino Martínez-Antonio

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Alberto Santos-Zavaleta

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César Bonavides-Martínez

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Delfino Garcia-Alonso

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Edgar Díaz-Peredo

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Fabiola Sánchez-Solano

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Heladia Salgado

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Julio Collado-Vides

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Martín Peralta-Gil

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Socorro Gama-Castro

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P2860

Operons in Escherichia coli: genomic analyses and predictions

The EcoCyc Database

Identifying protein-binding sites from unaligned DNA fragments

A comparative genomics approach to prediction of new members of regulons

Network motifs in the transcriptional regulation network of Escherichia coli

RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12

Prediction of operons in microbial genomes.

Regulation of gene expression in flux balance models of metabolism.

Identifying global regulators in transcriptional regulatory networks in bacteria.

RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12.

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D303-6

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scholarly article

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10.1093/NAR/GKH140

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Database issue

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32

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2004-01-01T00:00:00Z

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8955005

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14681419

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308874

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