IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels. - Wikidata - wikimedia - TriplyDB

IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels.

IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels.

http://www.wikidata.org/entity/Q41554466

about

Analysis of the opsin repertoire in the tardigrade Hypsibius dujardini provides insights into the evolution of opsin genes in panarthropoda Whole Genome Sequencing of the Asian Arowana (Scleropages formosus) Provides Insights into the Evolution of Ray-Finned Fishes Quo vadis venomics? A roadmap to neglected venomous invertebrates A scalable and accurate targeted gene assembly tool (SAT-Assembler) for next-generation sequencing data.Sequence assembly using next generation sequencing data--challenges and solutions.Predicting the functional repertoire of an organism from unassembled RNA-seq data.Bridger: a new framework for de novo transcriptome assembly using RNA-seq data.BinPacker: Packing-Based De Novo Transcriptome Assembly from RNA-seq Data A Polychaete's powerful punch: venom gland transcriptomics of Glycera reveals a complex cocktail of toxin homologs TransRate: reference-free quality assessment of de novo transcriptome assemblies.Optimal assembly strategies of transcriptome related to ploidies of eukaryotic organisms rnaQUAST: a quality assessment tool for de novo transcriptome assemblies.Biosynthesis of Antibiotic Leucinostatins in Bio-control Fungus Purpureocillium lilacinum and Their Inhibition on Phytophthora Revealed by Genome Mining.Profiling of adhesive-related genes in the freshwater cnidarian Hydra magnipapillata by transcriptomics and proteomics.Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks.Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms.Cell Proliferation Pattern and Twist Expression in an Aplacophoran Mollusk Argue Against Segmented Ancestry of Mollusca.The TIR Homologue Lies near Resistance Genes in Staphylococcus aureus, Coupling Modulation of Virulence and Antimicrobial Susceptibility.KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba).Comparative analyses of glycerotoxin expression unveil a novel structural organization of the bloodworm venom system Informed kmer selection for de novo transcriptome assembly TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs.Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano.Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.Brain regionalization genes are co-opted into shell field patterning in Mollusca.Kollector: transcript-informed, targeted de novo assembly of gene loci.Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis.Shared characteristics underpinning C4 leaf maturation derived from analysis of multiple C3 and C4 species of Flaveria.Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer.The antibody repertoire of colorectal cancer.DeepBound: accurate identification of transcript boundaries via deep convolutional neural fields.Routine Whole-Genome Sequencing for Outbreak Investigations of Staphylococcus aureus in a National Reference Center.Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities.In-depth proteomic analyses of Haliotis laevigata (greenlip abalone) nacre and prismatic organic shell matrix.Taxonomic and Functional Compositions Impacted by the Quality of Metatranscriptomic Assemblies.Evaluating the Performance of De Novo Assembly Methods for Venom-Gland Transcriptomics.Hypothesis on monochromatic vision in scorpionflies questioned by new transcriptomic data.First comprehensive multi-tissue transcriptome of Cherax quadricarinatus (Decapoda: Parastacidae) reveals unexpected diversity of endogenous cellulase The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly Transcriptomic analysis of crustacean neuropeptide signaling during the moult cycle in the green shore crab, Carcinus maenas

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IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels.

http://www.wikidata.org/entity/Q41554466

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IDBA-tran: a more robust de no ...... with uneven expression levels.

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IDBA-tran: a more robust de no ...... with uneven expression levels.

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Francis Y L Chin

http://www.w3.org/2001/XMLSchema#string

Henry C M Leung

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Ming-Ju Lv

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Siu-Ming Yiu

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Xin-Guang Zhu

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Yu Peng

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P2860

The sequence and de novo assembly of the giant panda genome

Optimization of de novo transcriptome assembly from next-generation sequencing data

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets

The transcriptional landscape of the yeast genome defined by RNA sequencing

TopHat: discovering splice junctions with RNA-Seq

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

BLAT--the BLAST-like alignment tool

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10.1093/BIOINFORMATICS/BTT219

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