Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins. - Wikidata - wikimedia - TriplyDB

Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins.

Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins.

http://www.wikidata.org/entity/Q41836932

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Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape Dry and wet approaches for genome-wide functional annotation of conventional and unconventional transcriptional activators Aptamer-nanoparticle complexes as powerful diagnostic and therapeutic tools.Elucidating the molecular architecture of adaptation via evolve and resequence experiments Homeodomain proteins: an update Disentangling the many layers of eukaryotic transcriptional regulation Hox genes: choreographers in neural development, architects of circuit organization Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes DNA-dependent formation of transcription factor pairs alters their binding specificity Role of HOXA9 in leukemia: dysregulation, cofactors and essential targets Protein-DNA binding in high-resolution Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy A common set of DNA regulatory elements shapes Drosophila appendages A Robust Analytical Pipeline for Genome-Wide Identification of the Genes Regulated by a Transcription Factor: Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq.Plant stem cell maintenance involves direct transcriptional repression of differentiation program.A Hox gene controls lateral line cell migration by regulating chemokine receptor expression downstream of Wnt signaling.A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data.Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE A novel approach for transcription factor analysis using SELEX with high-throughput sequencing (TFAST).Evolution of reduced co-activator dependence led to target expansion of a starvation response pathway.WSMD: weakly-supervised motif discovery in transcription factor ChIP-seq data.Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster.Homeotic function of Drosophila Bithorax-complex miRNAs mediates fertility by restricting multiple Hox genes and TALE cofactors in the CNS OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sites Absence of a simple code: how transcription factors read the genome Exploring the DNA-recognition potential of homeodomains Reducing ligation bias of small RNAs in libraries for next generation sequencing.Hox proteins display a common and ancestral ability to diversify their interaction mode with the PBC class cofactors.Beyond secondary structure: primary-sequence determinants license pri-miRNA hairpins for processing.Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks.Ancient expansion of the hox cluster in lepidoptera generated four homeobox genes implicated in extra-embryonic tissue formation.Deconvolving the recognition of DNA shape from sequence.High-resolution specificity from DNA sequencing highlights alternative modes of Lac repressor binding.COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.Genetic and functional modularity of Hox activities in the specification of limb-innervating motor neurons Antagonism versus cooperativity with TALE cofactors at the base of the functional diversification of Hox protein function Distinct molecular strategies for Hox-mediated limb suppression in Drosophila: from cooperativity to dispensability/antagonism in TALE partnership Contribution of distinct homeodomain DNA binding specificities to Drosophila embryonic mesodermal cell-specific gene expression programs.Binding polymorphism in the DNA bound state of the Pdx1 homeodomain An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example.

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P2860

Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins.

http://www.wikidata.org/entity/Q41836932

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Cofactor binding evokes latent ...... cificity between Hox proteins.

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Barry Honig

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Harmen J Bussemaker

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Iris Dror

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Matthew Slattery

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Namiko Abe

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Peng Liu

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Pilar Gomez-Alcala

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Remo Rohs

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Richard S Mann

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Tianyin Zhou

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P2860

Chromatin landscape dictates HSF binding to target DNA elements

Improving Hox protein classification across the major model organisms

An overview of the basic helix-loop-helix proteins

Structure of a HoxB1-Pbx1 heterodimer bound to DNA: role of the hexapeptide and a fourth homeodomain helix in complex formation

A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors

Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites

The role of DNA shape in protein-DNA recognition

Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex

Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta

DNA recognition by the RUNX1 transcription factor is mediated by an allosteric transition in the RUNT domain and by DNA bending

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