Genome-scale thermodynamic analysis of Escherichia coli metabolism
about
Impact of the solvent capacity constraint on E. coli metabolismA survey of carbon fixation pathways through a quantitative lensComputational approaches for understanding energy metabolismMINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomicsQuantification of Microbial PhenotypesQuantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0Spontaneous reaction silencing in metabolic optimizationEnsemble modeling for aromatic production in Escherichia coliConstruction and analysis of the model of energy metabolism in E. coliThe cost of efficiency in energy metabolismIntegrated stoichiometric, thermodynamic and kinetic modelling of steady state metabolismPutative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome dataA genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic informationReconstruction of biochemical networks in microorganismsPredicting biological system objectives de novo from internal state measurements.Systematic assignment of thermodynamic constraints in metabolic network models.Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networksA procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient.GrowMatch: an automated method for reconciling in silico/in vivo growth predictionsIn silico feasibility of novel biodegradation pathways for 1,2,4-trichlorobenzene.Quantitative assignment of reaction directionality in constraint-based models of metabolism: application to Escherichia coliImproving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality dataThermodynamic analysis of biodegradation pathways.Large-scale bi-level strain design approaches and mixed-integer programming solution techniques.Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methodsThermodynamic calculations for biochemical transport and reaction processes in metabolic networksElimination of thermodynamically infeasible loops in steady-state metabolic modelsMechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models.Biosynthesis of Histidine.The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli.A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype.Consistent estimation of Gibbs energy using component contributionsOrganization of enzyme concentration across the metabolic network in cancer cellsSystematizing the generation of missing metabolic knowledge.Efficient searching and annotation of metabolic networks using chemical similarity.Predicting internal cell fluxes at sub-optimal growthElementary Flux Mode Analysis Revealed Cyclization Pathway as a Powerful Way for NADPH Regeneration of Central Carbon Metabolism.Obstructions to Sampling Qualitative Properties.Quantitative assignment of reaction directionality in a multicompartmental human metabolic reconstruction.Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity.
P2860
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P2860
Genome-scale thermodynamic analysis of Escherichia coli metabolism
description
2005 nî lūn-bûn
@nan
2005年の論文
@ja
2005年学术文章
@wuu
2005年学术文章
@zh-cn
2005年学术文章
@zh-hans
2005年学术文章
@zh-my
2005年学术文章
@zh-sg
2005年學術文章
@yue
2005年學術文章
@zh
2005年學術文章
@zh-hant
name
Genome-scale thermodynamic analysis of Escherichia coli metabolism
@en
Genome-scale thermodynamic analysis of Escherichia coli metabolism
@nl
type
label
Genome-scale thermodynamic analysis of Escherichia coli metabolism
@en
Genome-scale thermodynamic analysis of Escherichia coli metabolism
@nl
prefLabel
Genome-scale thermodynamic analysis of Escherichia coli metabolism
@en
Genome-scale thermodynamic analysis of Escherichia coli metabolism
@nl
P2093
P2860
P1433
P1476
Genome-scale thermodynamic analysis of Escherichia coli metabolism
@en
P2093
Christopher S Henry
Linda J Broadbelt
Matthew D Jankowski
P2860
P304
P356
10.1529/BIOPHYSJ.105.071720
P407
P577
2005-11-18T00:00:00Z