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Insights on protein-DNA recognition by coarse grain modelling

Insights on protein-DNA recognition by coarse grain modelling

http://www.wikidata.org/entity/Q42631625

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Integrating multi-scale data on homologous recombination into a new recognition mechanism based on simulations of the RecA-ssDNA/dsDNA structure On docking, scoring and assessing protein-DNA complexes in a rigid-body framework Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments.Protein-DNA docking with a coarse-grained force field.PTools: an opensource molecular docking library An effective approach for generating a three-Cys2His2 zinc-finger-DNA complex model by docking PRIMO/PRIMONA: a coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy.A coarse-grained model of DNA with explicit solvation by water and ions.An experimentally-informed coarse-grained 3-Site-Per-Nucleotide model of DNA: structure, thermodynamics, and dynamics of hybridization.Perspective: Coarse-grained models for biomolecular systems.A coarse-grained MARTINI-like force field for DNA unzipping in nanopores.Pushing the limits of what is achievable in protein-DNA docking: benchmarking HADDOCK's performance.A knowledge-based orientation potential for transcription factor-DNA docking.Coarse-grained ions without charges: reproducing the solvation structure of NaCl in water using short-ranged potentials.The "sugar" coarse-grained DNA model.Heat conduction in nanoscale materials: a statistical-mechanics derivation of the local heat flux.A sequence-dependent rigid-base model of DNA.

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P2860

Insights on protein-DNA recognition by coarse grain modelling

http://www.wikidata.org/entity/Q42631625

description

2008 nî lūn-bûn

@nan

2008年の論文

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2008年論文

@yue

2008年論文

@zh-hant

2008年論文

@zh-hk

2008年論文

@zh-mo

2008年論文

@zh-tw

2008年论文

@wuu

2008年论文

@zh

2008年论文

@zh-cn

name

Insights on protein-DNA recognition by coarse grain modelling

@en

Insights on protein-DNA recognition by coarse grain modelling

@nl

type

label

Insights on protein-DNA recognition by coarse grain modelling

@en

Insights on protein-DNA recognition by coarse grain modelling

@nl

prefLabel

Insights on protein-DNA recognition by coarse grain modelling

@en

Insights on protein-DNA recognition by coarse grain modelling

@nl

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Journal of Computational Chemistry

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Insights on protein-DNA recognition by coarse grain modelling

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A Saladin

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B Hartmann

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C Prévost

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P Poulain

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P2860

Solution structure of the core NFATC1/DNA complex

An overview of the structures of protein-DNA complexes

Structural studies of Ets-1/Pax5 complex formation on DNA

Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target

DNA recognition by beta-sheets in the Arc repressor-operator crystal structure

Crystal structure of a yeast TBP/TATA-box complex

Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein

DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI

Origins of DNA-binding specificity: role of protein contacts with the DNA backbone

Principles of protein-protein interactions

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2582-2592

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10.1002/JCC.21014

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15

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29

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