A coarse-grained model of DNA with explicit solvation by water and ions. - Wikidata - wikimedia - TriplyDB

A coarse-grained model of DNA with explicit solvation by water and ions.

A coarse-grained model of DNA with explicit solvation by water and ions.

http://www.wikidata.org/entity/Q34481643

about

Close encounters with DNA An advanced coarse-grained nucleosome core particle model for computer simulations of nucleosome-nucleosome interactions under varying ionic conditions Structure and conformational dynamics of scaffolded DNA origami nanoparticles A Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment.Coarse-Grained Molecular Models of Water: A Review.The ABCs of molecular dynamics simulations on B-DNA, circa 2012.The power of coarse graining in biomolecular simulations.A coarse-grain three-site-per-nucleotide model for DNA with explicit ions.The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems Holliday Junction Thermodynamics and Structure: Coarse-Grained Simulations and Experiments An experimentally-informed coarse-grained 3-Site-Per-Nucleotide model of DNA: structure, thermodynamics, and dynamics of hybridization.More than the sum of its parts: coarse-grained peptide-lipid interactions from a simple cross-parametrization.Perspective: Coarse-grained models for biomolecular systems.Moving beyond Watson-Crick models of coarse grained DNA dynamics.A coarse-grained MARTINI-like force field for DNA unzipping in nanopores.The effects of multiple probes on the hybridization of target DNA on surfaces.Gas-phase hydration thermochemistry of sodiated and potassiated nucleic acid bases.Coarse-graining DNA for simulations of DNA nanotechnology.Exploring the mechanisms of DNA hybridization on a surface.The Statistical Segment Length of DNA: Opportunities for Biomechanical Modeling in Polymer Physics and Next-Generation Genomics.Adaptive resolution simulation of oligonucleotides.A sequence-dependent rigid-base model of DNA.Investigating the solid-liquid phase transition of water nanofilms using the generalized replica exchange method.Progress in molecular modelling of DNA materials Insight into nucleic acid counterion interactions from inside molecular dynamics simulations is “worth its salt”

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P2860

A coarse-grained model of DNA with explicit solvation by water and ions.

http://www.wikidata.org/entity/Q34481643

description

2010 nî lūn-bûn

@nan

2010 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի դեկտեմբերին հրատարակված գիտական հոդված

@hy

2010年の論文

@ja

2010年論文

@yue

2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

@zh-tw

2010年论文

@wuu

name

A coarse-grained model of DNA with explicit solvation by water and ions.

@ast

A coarse-grained model of DNA with explicit solvation by water and ions.

@en

A coarse-grained model of DNA with explicit solvation by water and ions.

@nl

type

label

A coarse-grained model of DNA with explicit solvation by water and ions.

@ast

A coarse-grained model of DNA with explicit solvation by water and ions.

@en

A coarse-grained model of DNA with explicit solvation by water and ions.

@nl

prefLabel

A coarse-grained model of DNA with explicit solvation by water and ions.

@ast

A coarse-grained model of DNA with explicit solvation by water and ions.

@en

A coarse-grained model of DNA with explicit solvation by water and ions.

@nl

P1433

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P2860

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P932

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P356

P1433

Journal of Physical Chemistry B

P1476

A coarse-grained model of DNA with explicit solvation by water and ions.

@en

P2093

Robert C DeMille

http://www.w3.org/2001/XMLSchema#string

Valeria Molinero

http://www.w3.org/2001/XMLSchema#string

P2860

The B-DNA dodecamer at high resolution reveals a spine of water on sodium

VMD: visual molecular dynamics

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew

Calculating structures and free energies of complex molecules: combining molecular mechanics and continuum models

Nucleic acids: theory and computer simulation, Y2K.

Using DNA to Link Gold Nanoparticles, Polymers and Molecules: a Theoretical Perspective.

Formation pathways of a guanine-quadruplex DNA revealed by molecular dynamics and thermodynamic analysis of the substates.

DNA-cation interactions: The major and minor grooves are flexible ionophores.

Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.

Molecular dynamics simulation of nucleic acids: successes, limitations, and promise.

P304

132-142

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scholarly article

P356

10.1021/JP107028N

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P407

P433

1

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P478

115

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P50

Thomas E Cheatham

P577

2010-12-14T00:00:00Z

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P5875

49681004

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P698

21155552

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P932

3019136

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