Importance of partially unfolded conformations for Mg(2+)-induced folding of RNA tertiary structure: structural models and free energies of Mg2+ interactions.
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Salt dependence of nucleic acid hairpin stabilityUnderstanding nucleic acid-ion interactionsBiomolecular electrostatics and solvation: a computational perspectiveComputational exploration of mobile ion distributions around RNA duplexMagnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch.Salt-dependent folding energy landscape of RNA three-way junction.Molecular crowding stabilizes folded RNA structure by the excluded volume effect.Predicting ion binding properties for RNA tertiary structures.Dependence of RNA tertiary structural stability on Mg2+ concentration: interpretation of the Hill equation and coefficient.The osmolyte TMAO stabilizes native RNA tertiary structures in the absence of Mg2+: evidence for a large barrier to folding from phosphate dehydration.Bidentate RNA-magnesium clamps: on the origin of the special role of magnesium in RNA folding.Structural characterization of naturally occurring RNA single mismatches.Salt contribution to RNA tertiary structure folding stabilityCritical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble.TBI server: a web server for predicting ion effects in RNA folding.The ionic atmosphere around A-RNA: Poisson-Boltzmann and molecular dynamics simulations.RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations.Electrostatics of nucleic acid folding under conformational constraintDenaturation of RNA secondary and tertiary structure by urea: simple unfolded state models and free energy parameters account for measured m-values.Evidence for a thermodynamically distinct Mg2+ ion associated with formation of an RNA tertiary structureThe expression platform and the aptamer: cooperativity between Mg2+ and ligand in the SAM-I riboswitch.Predicting electrostatic forces in RNA folding.Importance of diffuse metal ion binding to RNAUnwinding RNA's secrets: advances in the biology, physics, and modeling of complex RNAs.RNA folding: thermodynamic and molecular descriptions of the roles of ionsSingle-molecule kinetics reveal cation-promoted DNA duplex formation through ordering of single-stranded helicesA repulsive field: advances in the electrostatics of the ion atmosphereDo conformational biases of simple helical junctions influence RNA folding stability and specificity?Reduced model captures Mg(2+)-RNA interaction free energy of riboswitchesAll-Atom MD Predicts Magnesium-Induced Hairpin in Chemically Perturbed RNA Analog of F10 Therapeutic.Predicting Ion Effects in an RNA Conformational Equilibrium.Monte Carlo Tightly Bound Ion Model: Predicting Ion-Binding Properties of RNA with Ion Correlations and FluctuationsDirect quantitation of Mg2+-RNA interactions by use of a fluorescent dye.Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria.Formation of Tertiary Interactions during rRNA GTPase Center Folding.Comparing the Predictions of the Nonlinear Poisson-Boltzmann Equation and the Ion Size-Modified Poisson-Boltzmann Equation for a Low-Dielectric Charged Spherical Cavity in an Aqueous Salt Solution.Predicting ion-nucleic acid interactions by energy landscape-guided sampling.Many-body effect in ion binding to RNA.Nucleobases Undergo Dynamic Rearrangements during RNA Tertiary Folding.Generalized Manning Condensation Model Captures the RNA Ion Atmosphere.
P2860
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P2860
Importance of partially unfolded conformations for Mg(2+)-induced folding of RNA tertiary structure: structural models and free energies of Mg2+ interactions.
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年学术文章
@wuu
2007年学术文章
@zh
2007年学术文章
@zh-cn
2007年学术文章
@zh-hans
2007年学术文章
@zh-my
2007年学术文章
@zh-sg
2007年學術文章
@yue
2007年學術文章
@zh-hant
name
Importance of partially unfolded conformations for Mg
@nl
Importance of partially unfold ...... energies of Mg2+ interactions.
@en
type
label
Importance of partially unfolded conformations for Mg
@nl
Importance of partially unfold ...... energies of Mg2+ interactions.
@en
prefLabel
Importance of partially unfolded conformations for Mg
@nl
Importance of partially unfold ...... energies of Mg2+ interactions.
@en
P2093
P356
P1433
P1476
Importance of partially unfold ...... energies of Mg2+ interactions.
@en
P2093
Dan Grilley
David E Draper
Gokhan Caliskan
P304
10266-10278
P356
10.1021/BI062284R
P407
P577
2007-08-18T00:00:00Z