Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?
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Amino acid empirical contact energy definitions for fold recognition in the space of contact mapsA protein folding potential that places the native states of a large number of proteins near a local minimum.Statistical potential for assessment and prediction of protein structuresReconstruction and stability of secondary structure elements in the context of protein structure prediction.Exploratory studies of ab initio protein structure prediction: multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model.Statistical potentials for fold assessment.Can correct protein models be identified?TOUCHSTONE II: a new approach to ab initio protein structure predictionDatabase-derived potentials dependent on protein size for in silico folding and design.Divergence, recombination and retention of functionality during protein evolution.How good are simplified models for protein structure prediction?Optimized distance-dependent atom-pair-based potential DOOP for protein structure prediction.Optimal contact definition for reconstruction of contact maps.A position-specific distance-dependent statistical potential for protein structure and functional studyHow to guarantee optimal stability for most representative structures in the Protein Data Bank.A maximum likelihood framework for protein design.Scoring predictive models using a reduced representation of proteins: model and energy definition.Anti-cooperativity and cooperativity in hydrophobic interactions: Three-body free energy landscapes and comparison with implicit-solvent potential functions for proteins.Random field model reveals structure of the protein recombinational landscape.Random coil to globular thermal response of a protein (H3.1) with three knowledge-based coarse-grained potentials.Energy design for protein-protein interactions.On simplified global nonlinear function for fitness landscape: a case study of inverse protein folding.Statistical potential for modeling and ranking of protein-ligand interactionsA statistical mechanical method to optimize energy functions for protein folding.Lessons from the design of a novel atomic potential for protein folding.A contact energy function considering residue hydrophobic environment and its application in protein fold recognition.Perceptron learning of pairwise contact energies for proteins incorporating the amino acid environment.Role of native-state topology in the stabilization of intracellular antibodies.Toward correct protein folding potentialsSELECTpro: effective protein model selection using a structure-based energy function resistant to BLUNDERs.PIE-efficient filters and coarse grained potentials for unbound protein-protein docking.Assessment of the quality of energy functions for protein folding by using a criterion derived with the help of the noisy go model.Identification of correct regions in protein models using structural, alignment, and consensus information.A distance- and orientation-dependent energy function of amino acid key blocks.Pairwise contact energy statistical potentials can help to find probability of point mutations.Statistical mechanical refinement of protein structure prediction schemes. II. Mayer cluster expansion approachStatistical mechanical refinement of protein structure prediction schemes: Cumulant expansion approachInference of the solvation energy parameters of amino acids using maximum entropy approachComputational design of amyloid self-assembling peptides bearing aromatic residues and the cell adhesive motif Arg-Gly-Asp
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P2860
Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?
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2000 nî lūn-bûn
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2000年の論文
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2000年学术文章
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2000年学术文章
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2000年学术文章
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2000年学术文章
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2000年学术文章
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name
Can a pairwise contact potenti ...... decoys obtained by threading?
@en
Can a pairwise contact potenti ...... decoys obtained by threading?
@nl
type
label
Can a pairwise contact potenti ...... decoys obtained by threading?
@en
Can a pairwise contact potenti ...... decoys obtained by threading?
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Can a pairwise contact potenti ...... decoys obtained by threading?
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Can a pairwise contact potenti ...... decoys obtained by threading?
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P2860
P1433
P1476
Can a pairwise contact potenti ...... decoys obtained by threading?
@en
P2093
P2860
P304
P356
10.1002/(SICI)1097-0134(20000201)38:2<134::AID-PROT3>3.0.CO;2-A
P407
P577
2000-02-01T00:00:00Z