Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
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Intrinsic noise analyzer: a software package for the exploration of stochastic biochemical kinetics using the system size expansionDelay-induced stochastic oscillations in gene regulationAdiabatic coarse-graining and simulations of stochastic biochemical networks.Single-molecule enzymology à la Michaelis-MentenAccurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactionsOptimal signal processing in small stochastic biochemical networksTemperature control of fimbriation circuit switch in uropathogenic Escherichia coli: quantitative analysis via automated model abstractionAnalysis of stochastic strategies in bacterial competence: a master equation approachMulti-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulationRole of intracellular stochasticity in biofilm growth. Insights from population balance modelingUncoupled analysis of stochastic reaction networks in fluctuating environmentsLazy Updating of hubs can enable more realistic models by speeding up stochastic simulationsSolution of the chemical master equation by radial basis functions approximation with interface tracking.Efficient computation of parameter sensitivities of discrete stochastic chemical reaction networksBistability versus bimodal distributions in gene regulatory processes from population balance.Efficient modeling, simulation and coarse-graining of biological complexity with NFsim.Automatic generation of cellular reaction networks with Moleculizer 1.0.Stochastic hybrid modeling of intracellular calcium dynamics.Equilibrium distributions of simple biochemical reaction systems for time-scale separation in stochastic reaction networksStiffness detection and reduction in discrete stochastic simulation of biochemical systems.Stochastic models for regulatory networks of the genetic toggle switch.Mechanisms that enhance sustainability of p53 pulsesMichaelis-Menten speeds up tau-leaping under a wide range of conditionsAn accelerated algorithm for discrete stochastic simulation of reaction-diffusion systems using gradient-based diffusion and tau-leaping.The stochastic quasi-steady-state assumption: reducing the model but not the noise.Weighted next reaction method and parameter selection for efficient simulation of rare events in biochemical reaction systemsAccuracy of the Michaelis-Menten approximation when analysing effects of molecular noiseA common repressor pool results in indeterminacy of extrinsic noiseHybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycleThe Abridgment and Relaxation Time for a Linear Multi-Scale Model Based on Multiple Site Phosphorylation.Are Quasi-Steady-State Approximated Models Suitable for Quantifying Intrinsic Noise Accurately?The relationship between stochastic and deterministic quasi-steady state approximations.Constant-complexity stochastic simulation algorithm with optimal binning.Space as the final frontier in stochastic simulations of biological systems.On the precision of quasi steady state assumptions in stochastic dynamicsUltrasensitivity and fluctuations in the Barkai-Leibler model of chemotaxis receptors in Escherichia coli.Variance-corrected Michaelis-Menten equation predicts transient rates of single-enzyme reactions and response times in bacterial gene-regulation.Reduction of multiscale stochastic biochemical reaction networks using exact moment derivation.Stochastic model reduction using a modified Hill-type kinetic rate law.Frequency domain analysis of noise in simple gene circuits.
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P2860
Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
description
article
@en
im März 2003 veröffentlichter wissenschaftlicher Artikel
@de
wetenschappelijk artikel
@nl
наукова стаття, опублікована в березні 2003
@uk
name
Stochastic chemical kinetics a ...... ion to the Gillespie algorithm
@en
Stochastic chemical kinetics a ...... ion to the Gillespie algorithm
@nl
type
label
Stochastic chemical kinetics a ...... ion to the Gillespie algorithm
@en
Stochastic chemical kinetics a ...... ion to the Gillespie algorithm
@nl
prefLabel
Stochastic chemical kinetics a ...... ion to the Gillespie algorithm
@en
Stochastic chemical kinetics a ...... ion to the Gillespie algorithm
@nl
P2860
P356
P1476
Stochastic chemical kinetics a ...... ion to the Gillespie algorithm
@en
P2093
Adam P. Arkin
Christopher V. Rao
P2860
P304
P356
10.1063/1.1545446
P407
P577
2003-03-15T00:00:00Z