Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
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Shotgun metagenomes and multiple primer pair-barcode combinations of amplicons reveal biases in metabarcoding analyses of fungiDetection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota)Oomycete-specific ITS primers for identification and metabarcodingHigher fungal diversity is correlated with lower CO2 emissions from dead wood in a natural forestDynamics in the Strawberry Rhizosphere Microbiome in Response to Biochar and Botrytis cinerea Leaf InfectionWhat do we learn from cultures in the omics age? High-throughput sequencing and cultivation of leaf-inhabiting endophytes from beech (Fagus sylvatica L.) revealed complementary community composition but similar correlations with local habitat cond...The mycobiome of root canal infections is correlated to the bacteriomeMicrobial diversity in European alpine permafrost and active layers.Determining threshold values for barcoding fungi: lessons from Cortinarius (Basidiomycota), a highly diverse and widespread ectomycorrhizal genus.Unexpectedly High Beta-Diversity of Root-Associated Fungal Communities in the Bolivian Andes.Responses of microbial community from tropical pristine coastal soil to crude oil contaminationDifferences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms.Leaf Treatments with a Protein-Based Resistance Inducer Partially Modify Phyllosphere Microbial Communities of Grapevine.Microbial Diversity of Browning Peninsula, Eastern Antarctica Revealed Using Molecular and Cultivation Methods.Critical Issues in Mycobiota Analysis.Microbiology Meets Archaeology: Soil Microbial Communities Reveal Different Human Activities at Archaic Monte Iato (Sixth Century BC).Analysis of the Fungal Diversity in Citrus Leaves with Greasy Spot Disease Symptoms.Characterizing root-associated fungal communities and soils of Douglas-fir (Pseudotsuga menziesii) stands that naturally produce Oregon white truffles (Tuber oregonense and Tuber gibbosum).Spatiotemporal Variation and Networks in the Mycobiome of the Wheat CanopyOomycete Communities Associated with Reed Die-Back Syndrome.Microbial communities with distinct denitrification potential in spruce and beech soils differing in nitrate leachingFungal Communities Including Plant Pathogens in Near Surface Air Are Similar across Northwestern Europe.Read quality-based trimming of the distal ends of public fungal DNA sequences is nowhere near satisfactoryCulturomics and Amplicon-based Metagenomic Approaches for the Study of Fungal Population in Human Gut Microbiota.An in situ inventory of fungi and their associated migrating bacteria in forest soils using fungal highway columns.Characterization of Bacterial and Fungal Community Dynamics by High-Throughput Sequencing (HTS) Metabarcoding during Flax Dew-Retting.Food Storage by the Savanna Termite Cornitermes cumulans (Syntermitinae): a Strategy to Improve Hemicellulose Digestibility?Fight Fungi with Fungi: Antifungal Properties of the Amphibian Mycobiome.Cheatgrass invasion alters the abundance and composition of dark septate fungal communities in sagebrush steppe
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Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
description
article
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im Juli 2013 veröffentlichter wissenschaftlicher Artikel
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wetenschappelijk artikel
@nl
наукова стаття, опублікована в липні 2013
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name
Improved software detection an ...... environmental sequencing data
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Improved software detection an ...... environmental sequencing data
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type
label
Improved software detection an ...... environmental sequencing data
@en
Improved software detection an ...... environmental sequencing data
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prefLabel
Improved software detection an ...... environmental sequencing data
@en
Improved software detection an ...... environmental sequencing data
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P2093
P2860
P50
P356
P1476
Improved software detection an ...... environmental sequencing data
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P2093
Anna Godhe
Anthony S. Amend
Ari Jumpponen
Erik Kristiansson
Filipe de Sousa
Ingo Ebersberger
K. Martin Eriksson
Kemal Sanli
Pierre De Wit
Sara Branco
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P356
10.1111/2041-210X.12073
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P577
2013-07-01T00:00:00Z