How to describe protein motion without amino acid sequence and atomic coordinates. - sprookjes - yvandenbroek - TriplyDB

How to describe protein motion without amino acid sequence and atomic coordinates.

How to describe protein motion without amino acid sequence and atomic coordinates.

http://www.wikidata.org/entity/Q30330511

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Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes CHARMM: the biomolecular simulation program Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics Functional Importance of Mobile Ribosomal Proteins Subtle balance of tropoelastin molecular shape and flexibility regulates dynamics and hierarchical assembly.Insight into the structure, dynamics and the unfolding property of amylosucrases: implications of rational engineering on thermostability Statistical-mechanical theory of DNA looping.Defining coarse-grained representations of large biomolecules and biomolecular complexes from elastic network models.Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data.Normal-mode flexible fitting of high-resolution structure of biological molecules toward one-dimensional low-resolution data Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion.Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models.Group theory and biomolecular conformation: I. Mathematical and computational models Molecular dynamics simulations of peptides and proteins with amplified collective motions.Simulation of F-actin filaments of several microns.Theoretical analysis of twist/bend ratio and mechanical moduli of bacterial flagellar hook and filament Normal mode-based fitting of atomic structure into electron density maps: application to sarcoplasmic reticulum Ca-ATPase The role of shape in determining molecular motions.Comparison of mode analyses at different resolutions applied to nucleic acid systems.Substructure synthesis method for simulating large molecular complexes Common mechanism of pore opening shared by five different potassium channels Coarse-grained normal mode analysis in structural biology.Probing intra- versus interchain kinetic preferences of L-Thr acylation on dimeric VibF with mass spectrometry.On the packing density of the unbound protein-protein interaction interface and its implications in dynamics.A New Method for Coarse-Grained Elastic Normal-Mode Analysis.Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy.New advances in normal mode analysis of supermolecular complexes and applications to structural refinement StructMap: Elastic Distance Analysis of Electron Microscopy Maps for Studying Conformational Changes Packing regularities in biological structures relate to their dynamics.Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.fSUB: normal mode analysis with flexible substructures.Normal mode analysis with molecular geometry restraints: bridging molecular mechanics and elastic models PIM: phase integrated method for normal mode analysis of biomolecules in a crystalline environment Identification of motions in membrane proteins by elastic network models and their experimental validation.A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography.Vibrational dynamics of icosahedrally symmetric biomolecular assemblies compared with predictions based on continuum elasticity Protein elastic network models and the ranges of cooperativity Versatility of Approximating Single-Particle Electron Microscopy Density Maps Using Pseudoatoms and Approximation-Accuracy Control

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P2860

How to describe protein motion without amino acid sequence and atomic coordinates.

http://www.wikidata.org/entity/Q30330511

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2002 nî lūn-bûn

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2002 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2002 թվականի հունիսին հրատարակված գիտական հոդված

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2002年の論文

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2002年学术文章

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2002年学术文章

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2002年学术文章

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2002年学术文章

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2002年學術文章

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How to describe protein motion without amino acid sequence and atomic coordinates.

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How to describe protein motion without amino acid sequence and atomic coordinates.

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How to describe protein motion without amino acid sequence and atomic coordinates.

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How to describe protein motion without amino acid sequence and atomic coordinates.

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How to describe protein motion without amino acid sequence and atomic coordinates.

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P1433

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Proceedings of the National Academy of Sciences of the United States of America

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How to describe protein motion without amino acid sequence and atomic coordinates.

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P2093

Dengming Ming

http://www.w3.org/2001/XMLSchema#string

Jianpeng Ma

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Maxime A Lambert

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Yifei Kong

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Zhong Huang

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P2860

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

Structure of ferricytochrome c' from Rhodospirillum molischianum at 1.67 A resolution

Structure of pig plasma retinol-binding protein at 1.65 A resolution

All-atom empirical potential for molecular modeling and dynamics studies of proteins

A dynamic model for the allosteric mechanism of GroEL

Situs: A package for docking crystal structures into low-resolution maps from electron microscopy

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

Anisotropy of fluctuation dynamics of proteins with an elastic network model

Flexibility and packing in proteins

Intrinsic flexibility and gating mechanism of the potassium channel KcsA

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