A New Method for Coarse-Grained Elastic Normal-Mode Analysis. - sprookjes - yvandenbroek - TriplyDB

A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

http://www.wikidata.org/entity/Q35097779

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Normal-Mode Refinement of Anisotropic Thermal Parameters for Potassium Channel KcsA at 3.2 Å Crystallographic Resolution Crystal structure of unliganded influenza B virus hemagglutinin.Structural improvement of unliganded simian immunodeficiency virus gp120 core by normal-mode-based X-ray crystallographic refinement Structure of the N-terminal fragment ofEscherichia coliLon protease Elastic network models capture the motions apparent within ensembles of RNA structures Identifying essential pairwise interactions in elastic network model using the alpha shape theory.FlexE: Using elastic network models to compare models of protein structure.Method for identification of rigid domains and hinge residues in proteins based on exhaustive enumeration.Defining coarse-grained representations of large biomolecules and biomolecular complexes from elastic network models.A force field for virtual atom molecular mechanics of proteins Atomic description of the immune complex involved in heparin-induced thrombocytopenia Large-scale evaluation of dynamically important residues in proteins predicted by the perturbation analysis of a coarse-grained elastic model Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion.Generalized spring tensor models for protein fluctuation dynamics and conformation changes.A computational investigation on the connection between dynamics properties of ribosomal proteins and ribosome assembly A natural coarse graining for simulating large biomolecular motion Normal mode refinement of anisotropic thermal parameters for a supramolecular complex at 3.42-A crystallographic resolution.Deciphering the mismatch recognition cycle in MutS and MSH2-MSH6 using normal-mode analysis.Augmenting the anisotropic network model with torsional potentials improves PATH performance, enabling detailed comparison with experimental rate data.fSUB: normal mode analysis with flexible substructures.Normal mode analysis with molecular geometry restraints: bridging molecular mechanics and elastic models PIM: phase integrated method for normal mode analysis of biomolecules in a crystalline environment A minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography.Vibrational subsystem analysis: A method for probing free energies and correlations in the harmonic limit.Application of normal-mode refinement to X-ray crystal structures at the lower resolution limit All-atom contact model for understanding protein dynamics from crystallographic B-factors Probing the structural dynamics of the CRISPR-Cas9 RNA-guided DNA-cleavage system by coarse-grained modeling.DynOmics: dynamics of structural proteome and beyond.Analyzing the flexibility of RNA structures by constraint counting.Anharmonic normal mode analysis of elastic network model improves the modeling of atomic fluctuations in protein crystal structures.Investigating the structural dynamics of the PIEZO1 channel activation and inactivation by coarse-grained modeling.Probing the Structural Dynamics of the NMDA Receptor Activation by Coarse-Grained Modeling.The ribosome structure controls and directs mRNA entry, translocation and exit dynamics Elastic network model-based normal mode analysis reveals the conformational couplings in the tripartite AcrAB-TolC multidrug efflux complex.iMod: multipurpose normal mode analysis in internal coordinates.Fast and accurate computation schemes for evaluating vibrational entropy of proteins.Computing protein dynamics from protein structure with elastic network models Torsional Network Model: Normal Modes in Torsion Angle Space Better Correlate with Conformation Changes in Proteins

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P2860

A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

http://www.wikidata.org/entity/Q35097779

description

2006 nî lūn-bûn

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2006 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2006 թվականի հունվարին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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name

A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

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A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

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A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

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A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

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A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

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A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

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Journal of Chemical Theory and Computation

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A New Method for Coarse-Grained Elastic Normal-Mode Analysis.

@en

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Billy Poon

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Jianpeng Ma

http://www.w3.org/2001/XMLSchema#string

Mingyang Lu

http://www.w3.org/2001/XMLSchema#string

P2860

Domain movements in human fatty acid synthase by quantized elastic deformational model.

All-atom empirical potential for molecular modeling and dynamics studies of proteins

A dynamic model for the allosteric mechanism of GroEL

Motions and negative cooperativity between p97 domains revealed by cryo-electron microscopy and quantised elastic deformational model

Dynamics of large proteins through hierarchical levels of coarse-grained structures.

How to describe protein motion without amino acid sequence and atomic coordinates.

Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition.

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins.

Refinement of F-actin model against fiber diffraction data by long-range normal modes.

GroEL/GroES: structure and function of a two-stroke folding machine.

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464-471

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scholarly article

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10.1021/CT050307U

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3

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2

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2006-01-01T00:00:00Z

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51494105

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21760758

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3133770

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