Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data. - sprookjes - yvandenbroek - TriplyDB

Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

http://www.wikidata.org/entity/Q30720610

about

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.VAMPS: a website for visualization and analysis of microbial population structures Host-specificity among abundant and rare taxa in the sponge microbiome MHC-dependent mate choice is linked to a trace-amine-associated receptor gene in a mammal Molecular Systematics of the Genus Acidithiobacillus: Insights into the Phylogenetic Structure and Diversification of the Taxon Bacterial symbiont sharing in Megalomyrmex social parasites and their fungus-growing ant hosts Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution.The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data.METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data.Annual community patterns are driven by seasonal switching between closely related marine bacteria.From Vineyard Soil to Wine Fermentation: Microbiome Approximations to Explain the "terroir" Concept.Diversity is the question, not the answer Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands Oligotyping analysis of the human oral microbiome Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences Oligotyping reveals differences between gut microbiomes of free-ranging sympatric Namibian carnivores (Acinonyx jubatus, Canis mesomelas) on a bacterial species-like level Sewage reflects the microbiomes of human populations.Population dynamics and ecology of Arcobacter in sewage.Dynamics of tongue microbial communities with single-nucleotide resolution using oligotyping.Oligotyping reveals community level habitat selection within the genus Vibrio Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics Bacterial colonization and succession in a newly opened hospital.Blautia and Prevotella sequences distinguish human and animal fecal pollution in Brazil surface waters.Discovering new indicators of fecal pollution Comparisons of the composition and biogeographic distribution of the bacterial communities occupying South African thermal springs with those inhabiting deep subsurface fracture water.Phaeocystis antarctica blooms strongly influence bacterial community structures in the Amundsen Sea polynya.A single genus in the gut microbiome reflects host preference and specificity Humpback whale populations share a core skin bacterial community: towards a health index for marine mammals?Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences.Divergence across diet, time and populations rules out parallel evolution in the gut microbiomes of Trinidadian guppies.Marine microbial community dynamics and their ecological interpretation.Community assembly of a euryhaline fish microbiome during salinity acclimation.Sequencing and beyond: integrating molecular 'omics' for microbial community profiling.Influence of Land Use, Nutrients, and Geography on Microbial Communities and Fecal Indicator Abundance at Lake Michigan Beaches.Diverse, rare microbial taxa responded to the Deepwater Horizon deep-sea hydrocarbon plume.Comparison of Sewage and Animal Fecal Microbiomes by Using Oligotyping Reveals Potential Human Fecal Indicators in Multiple Taxonomic Groups Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.

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Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

http://www.wikidata.org/entity/Q30720610

description

2013 nî lūn-bûn

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2013 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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Oligotyping: Differentiating b ...... taxa using 16S rRNA gene data.

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Oligotyping: Differentiating b ...... taxa using 16S rRNA gene data.

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Methods in Ecology and Evolution

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Oligotyping: Differentiating b ...... taxa using 16S rRNA gene data

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Leslie G Murphy

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Mitchell L Sogin

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Sharon L Grim

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Removing noise from pyrosequenced amplicons

Enterotypes of the human gut microbiome

Human gut microbiome viewed across age and geography

QIIME allows analysis of high-throughput community sequencing data

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

Microbial diversity in the deep sea and the underexplored "rare biosphere"

MrBayes 3: Bayesian phylogenetic inference under mixed models

A molecular view of microbial diversity and the biosphere

Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation

Estimation of sequencing error rates in short reads

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