Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm. - sprookjes - yvandenbroek - TriplyDB

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.

http://www.wikidata.org/entity/Q37138680

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Integrating genetics and epigenetics in breast cancer: biological insights, experimental, computational methods and therapeutic potential Methylation of migraine-related genes in different tissues of the rat Site-specific methylation changes in the glucocorticoid receptor exon 1F promoter in relation to life adversity: systematic review of contributing factors.DNA methylation: conducting the orchestra from exposure to phenotype?Genome-wide epigenomic profiling for biomarker discovery Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation Poly (ADP-ribose) polymerase 1 transcriptional regulation: a novel crosstalk between histone modification H3K9ac and ETS1 motif hypomethylation in BRCA1-mutated ovarian cancer Recurrent epimutations activate gene body promoters in primary glioblastoma Improved reporting of DNA methylation data derived from studies of the human placenta.Methods for identifying differentially methylated regions for sequence- and array-based data.Uncovering the transcriptomic and epigenomic landscape of nicotinic receptor genes in non-neuronal tissues.Comparative DNA methylome analysis of endometrial carcinoma reveals complex and distinct deregulation of cancer promoters and enhancers.Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods Associations between DNA methylation and schizophrenia-related intermediate phenotypes - a gene set enrichment analysis Systematic identification and annotation of human methylation marks based on bisulfite sequencing methylomes reveals distinct roles of cell type-specific hypomethylation in the regulation of cell identity genes.Widespread contribution of transposable elements to the innovation of gene regulatory networks Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation.Intermediate DNA methylation is a conserved signature of genome regulation.Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos.Regulatory network decoded from epigenomes of surface ectoderm-derived cell types.Induction of hematopoietic and endothelial cell program orchestrated by ETS transcription factor ER71/ETV2.De novo identification of differentially methylated regions in the human genome.Epigenetic regulation of traf2- and Nck-interacting kinase (TNIK) in polycystic ovary syndrome.Hypoxia-Induced Changes in DNA Methylation Alter RASAL1 and TGFβ1 Expression in Human Trabecular Meshwork Cells.Selecting Hypomethylated Genomic Regions Using MRE-Seq.Genome-wide Gene-Asbestos Exposure Interaction Association Study Identifies a Common Susceptibility Variant on 22q13.31 Associated with Lung Cancer Risk.Combinatorial identification of DNA methylation patterns over age in the human brain.High fat diet and exercise lead to a disrupted and pathogenic DNA methylome in mouse liver.Adaptation of the targeted capture Methyl-Seq platform for the mouse genome identifies novel tissue-specific DNA methylation patterns of genes involved in neurodevelopment Genome-wide DNA methylation analysis in precursor B-cells.Whole-Genome DNA Methylation Profiling Identifies Epigenetic Signatures of Uterine Carcinosarcoma Targeted DNA Methylation Screen in the Mouse Mammary Genome Reveals a Parity-Induced Hypermethylation of Igf1r That Persists Long after Parturition.The influence of menstrual cycle and endometriosis on endometrial methylome.Systematic identification of genetic influences on methylation across the human life course.Mapping of Variable DNA Methylation Across Multiple Cell Types Defines a Dynamic Regulatory Landscape of the Human Genome Gene-set Analysis with CGI Information for Differential DNA Methylation Profiling Joint-specific DNA methylation and transcriptome signatures in rheumatoid arthritis identify distinct pathogenic processes Role for tissue-dependent methylation differences in the expression of FOXE1 in nontumoral thyroid glands Regulation of DNA methyltransferase 1 transcription in BRCA1-mutated breast cancer: a novel crosstalk between E2F1 motif hypermethylation and loss of histone H3 lysine 9 acetylation.Genome-wide methylation patterns provide insight into differences in breast tumor biology between American women of African and European ancestry.

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Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.

http://www.wikidata.org/entity/Q37138680

description

article científic

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article scientifique

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articolo scientifico

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artigo científico

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bilimsel makale

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scientific article published on 26 June 2013

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vedecký článok

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vetenskaplig artikel

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videnskabelig artikel

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vědecký článek

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name

Functional DNA methylation dif ...... vered using the M&M algorithm.

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Functional DNA methylation dif ...... vered using the M&M algorithm.

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type

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Functional DNA methylation dif ...... vered using the M&M algorithm.

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Functional DNA methylation dif ...... vered using the M&M algorithm.

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prefLabel

Functional DNA methylation dif ...... vered using the M&M algorithm.

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Functional DNA methylation dif ...... vered using the M&M algorithm.

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Genome Research

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Functional DNA methylation dif ...... vered using the M&M algorithm.

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Angela Tam

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Baoxue Zhang

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Chibo Hong

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Cécile L Maire

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Ginell Elliott

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Henriette O'Geen

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Jeffrey B Cheng

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Jia Zhou

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Joseph F Costello

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Keith L Ligon

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Model-based analysis of ChIP-Seq (MACS)

Bioconductor: open software development for computational biology and bioinformatics

A striking organization of a large family of human neural cadherin-like cell adhesion genes

An integrated encyclopedia of DNA elements in the human genome

A high-resolution map of human evolutionary constraint using 29 mammals

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

The accessible chromatin landscape of the human genome

DNA methylation profiling of human chromosomes 6, 20 and 22

Comparative DNA sequence analysis of mouse and human protocadherin gene clusters

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1522-1540

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scholarly article

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10.1101/GR.156539.113

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9

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23

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Theresa A Kadlecek

Vasavi Sundaram

Pamela A F Madden

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2013-06-26T00:00:00Z

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242333732

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23804400

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DNA methylation

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3759728

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