Fast mapping of short sequences with mismatches, insertions and deletions using index structures - Wikidata - awgldk - TriplyDB

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

http://www.wikidata.org/entity/Q21563491

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A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti CRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 protein Designing Efficient Spaced Seeds for SOLiD Read Mapping READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation Functional characterization of the RNA chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophilia Integrative "omics"-approach discovers dynamic and regulatory features of bacterial stress responses Target recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA)RNA sequencing analysis of the broad-host-range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant RNase J is required for processing of a small number of RNAs in Rhodobacter sphaeroides Functional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infection Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens Argonaute proteins affect siRNA levels and accumulation of a novel extrachromosomal DNA from the Dictyostelium retrotransposon DIRS-1 Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315 ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions Identification of regulatory RNAs in Bacillus subtilis Alignment of Short Reads: A Crucial Step for Application of Next-Generation Sequencing Data in Precision Medicine Prospects and limitations of full-text index structures in genome analysis Adaptable probabilistic mapping of short reads using position specific scoring matrices.The transcriptional landscape of Chlamydia pneumoniae The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation Advantages of Array-Based Technologies for Pre-Emptive Pharmacogenomics Testing Differential and coherent processing patterns from small RNAs Conservation and losses of non-coding RNAs in avian genomes Quo vadis venomics? A roadmap to neglected venomous invertebrates TSSAR: TSS annotation regime for dRNA-seq data.Bioinformatics of prokaryotic RNAs Phylogenetic position of a copper age sheep (Ovis aries) mitochondrial DNA Analysis of the Microprocessor in Dictyostelium: The Role of RbdB, a dsRNA Binding Protein Suitability of Different Mapping Algorithms for Genome-wide Polymorphism Scans with Pool-Seq Data sRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1 Transcription Profiling of Bacillus subtilis Cells Infected with AR9, a Giant Phage Encoding Two Multisubunit RNA Polymerases Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)cis-Encoded Small RNAs, a Conserved Mechanism for Repression of Polysaccharide Utilization in Bacteroides Phenotypic Heterogeneity Affects Stenotrophomonas maltophilia K279a Colony Morphotypes and β-Lactamase Expression

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Fast mapping of short sequences with mismatches, insertions and deletions using index structures

http://www.wikidata.org/entity/Q21563491

description

2009 nî lūn-bûn

@nan

2009 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի սեպտեմբերին հրատարակված գիտական հոդված

@hy

2009年の論文

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2009年論文

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2009年論文

@zh-hant

2009年論文

@zh-hk

2009年論文

@zh-mo

2009年論文

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2009年论文

@wuu

name

Fast mapping of short sequence ...... letions using index structures

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Fast mapping of short sequence ...... letions using index structures

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Fast mapping of short sequence ...... letions using index structures

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Fast mapping of short sequence ...... letions using index structures

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type

label

Fast mapping of short sequence ...... letions using index structures

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Fast mapping of short sequence ...... letions using index structures

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Fast mapping of short sequence ...... letions using index structures

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Fast mapping of short sequence ...... letions using index structures

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Fast Mapping of Short Sequence ...... letions Using Index Structures

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Fast mapping of short sequence ...... letions using index structures

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Fast mapping of short sequence ...... letions using index structures

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Fast mapping of short sequence ...... letions using index structures

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Fast mapping of short sequence ...... letions using index structures

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JOURNAL.PCBI.1000502

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PLOS Computational Biology

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Fast mapping of short sequence ...... letions using index structures

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Stefan Kurtz

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Steve Hoffmann

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P2860

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

SHRiMP: accurate mapping of short color-space reads

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

Mapping short DNA sequencing reads and calling variants using mapping quality scores

ZOOM! Zillions of oligos mapped

Fast and accurate short read alignment with Burrows-Wheeler transform

SOAP: short oligonucleotide alignment program

A fast bit-vector algorithm for approximate string matching based on dynamic programming

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing

Accuracy and quality of massively parallel DNA pyrosequencing.

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scholarly article

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9

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5

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Peter F. Stadler

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2009-09-01T00:00:00Z

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26808288

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19750212

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2730575

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