A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family
about
PCDB: a database of protein conformational diversityThe interface of protein structure, protein biophysics, and molecular evolutionA new model for pore formation by cholesterol-dependent cytolysinsThermal adaptation of conformational dynamics in ribonuclease HAmino-acid site variability among natural and designed proteinsComputational protein design quantifies structural constraints on amino acid covariationFlexible backbone sampling methods to model and design protein alternative conformationsServerification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)Prediction of mutational tolerance in HIV-1 protease and reverse transcriptase using flexible backbone protein designAssessment of flexible backbone protein design methods for sequence library prediction in the therapeutic antibody Herceptin-HER2 interfacePredicting the tolerated sequences for proteins and protein interfaces using RosettaBackrub flexible backbone designRosettaBackrub--a web server for flexible backbone protein structure modeling and designParallel dynamics and evolution: Protein conformational fluctuations and assembly reflect evolutionary changes in sequence and structure.Tradeoff between stability and multispecificity in the design of promiscuous proteins.Using entropy maximization to understand the determinants of structural dynamics beyond native contact topologyIn silico elucidation of the recognition dynamics of ubiquitinEvol and ProDy for bridging protein sequence evolution and structural dynamicsBiophysics of protein evolution and evolutionary protein biophysicsThe role of local backrub motions in evolved and designed mutationsConformational stabilization of ubiquitin yields potent and selective inhibitors of USP7.Assessing the native state conformational distribution of ubiquitin by peptide acidityToward a predictive understanding of slow methyl group dynamics in proteinsEnsembler: Enabling High-Throughput Molecular Simulations at the Superfamily ScaleEnsemble-based characterization of unbound and bound states on protein energy landscape.Accessing ns-micros side chain dynamics in ubiquitin with methyl RDCs.Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin.Computer-aided design of functional protein interactions.Fine-tuning the extent and dynamics of binding cleft opening as a potential general regulatory mechanism in parvulin-type peptidyl prolyl isomerases.Computational design of protein-ligand interfaces: potential in therapeutic development.Recapturing the Correlated Motions of Protein Using Coarse- Grained Models.Protein backbone ensemble generation explores the local structural space of unseen natural homologs.BP-Dock: a flexible docking scheme for exploring protein-ligand interactions based on unbound structures.Versatility and invariance in the evolution of homologous heteromeric interfaces.The effects of rigid motions on elastic network model force constants.Drug-resistant HIV-1 protease regains functional dynamics through cleavage site coevolution.Correlation between local structural dynamics of proteins inferred from NMR ensembles and evolutionary dynamics of homologues of known structure.De novo design of a hyperstable non-natural protein-ligand complex with sub-Å accuracy.Critical Fluctuations in the Native State of Proteins.Proteome-wide prediction of overlapping small molecule and protein binding sites using structure.
P2860
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P2860
A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family
description
2009 nî lūn-bûn
@nan
2009 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
name
A Correspondence Between Solut ...... tional Diversity of its Family
@ast
A Correspondence Between Solut ...... tional Diversity of its Family
@en
A Correspondence Between Solut ...... tional Diversity of its Family
@nl
type
label
A Correspondence Between Solut ...... tional Diversity of its Family
@ast
A Correspondence Between Solut ...... tional Diversity of its Family
@en
A Correspondence Between Solut ...... tional Diversity of its Family
@nl
altLabel
A correspondence between solut ...... tional diversity of its family
@en
prefLabel
A Correspondence Between Solut ...... tional Diversity of its Family
@ast
A Correspondence Between Solut ...... tional Diversity of its Family
@en
A Correspondence Between Solut ...... tional Diversity of its Family
@nl
P2860
P50
P3181
P1476
A Correspondence Between Solut ...... tional Diversity of its Family
@en
P2093
Gregory D Friedland
P2860
P304
P3181
P356
10.1371/JOURNAL.PCBI.1000393
P407
P577
2009-05-01T00:00:00Z