Discrimination of the native from misfolded protein models with an energy function including implicit solvation
about
Advances in Homology Protein Structure ModelingValidity of Gō models: comparison with a solvent-shielded empirical energy decomposition.A composite score for predicting errors in protein structure modelsCHARMM: the biomolecular simulation programAmino acid empirical contact energy definitions for fold recognition in the space of contact mapsA decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.Fibronectin unfolding revisited: modeling cell traction-mediated unfolding of the tenth type-III repeatProtein folding and function: the N-terminal fragment in adenylate kinase.Local alignment refinement using structural assessmentSequence of events in folding mechanism: beyond the Gō modelDecoys 'R' Us: a database of incorrect conformations to improve protein structure predictionFree energy determinants of tertiary structure and the evaluation of protein models.Lattice protein folding with two and four-body statistical potentials.Exploratory studies of ab initio protein structure prediction: multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model.Statistical potentials for fold assessment.Evaluating CASP4 predictions with physical energy functions.Can correct protein models be identified?Protein structure evaluation using an all-atom energy based empirical scoring function.Protein structural model selection by combining consensus and single scoring methods.Improvement in low-homology template-based modeling by employing a model evaluation method with focus on topology.Atomic hydration potentials using a Monte Carlo Reference State (MCRS) for protein solvation modeling.A practical implicit solvent potential for NMR structure calculation.Nonbonded terms extrapolated from nonlocal knowledge-based energy functions improve error detection in near-native protein structure models.Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field.Fold assessment for comparative protein structure modeling.Random forest-based protein model quality assessment (RFMQA) using structural features and potential energy termsValidation of protein models by a neural network approach.How well can the accuracy of comparative protein structure models be predicted?Artefacts and biases affecting the evaluation of scoring functions on decoy sets for protein structure prediction.Identifying native-like protein structures with scoring functions based on all-atom ECEPP force fields, implicit solvent models and structure relaxationSelective refinement and selection of near-native models in protein structure prediction.QMEANclust: estimation of protein model quality by combining a composite scoring function with structural density information.Partial unfolding and refolding for structure refinement: A unified approach of geometric simulations and molecular dynamics.Predicting local quality of a sequence-structure alignment.A pairwise residue contact area-based mean force potential for discrimination of native protein structure.Sub-nanoscale surface ruggedness provides a water-tight seal for exposed regions in soluble protein structure.Absolute quality evaluation of protein model structures using statistical potentials with respect to the native and reference states.Discrimination of Native-like States of Membrane Proteins with Implicit Membrane-based Scoring Functions.Statistical mechanics-based method to extract atomic distance-dependent potentials from protein structures.A sampling-based method for ranking protein structural models by integrating multiple scores and features.
P2860
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P2860
Discrimination of the native from misfolded protein models with an energy function including implicit solvation
description
1999 nî lūn-bûn
@nan
1999 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
1999 թվականի մայիսին հրատարակված գիտական հոդված
@hy
1999年の論文
@ja
1999年論文
@yue
1999年論文
@zh-hant
1999年論文
@zh-hk
1999年論文
@zh-mo
1999年論文
@zh-tw
1999年论文
@wuu
name
Discrimination of the native f ...... n including implicit solvation
@ast
Discrimination of the native f ...... n including implicit solvation
@en
Discrimination of the native f ...... n including implicit solvation
@nl
type
label
Discrimination of the native f ...... n including implicit solvation
@ast
Discrimination of the native f ...... n including implicit solvation
@en
Discrimination of the native f ...... n including implicit solvation
@nl
prefLabel
Discrimination of the native f ...... n including implicit solvation
@ast
Discrimination of the native f ...... n including implicit solvation
@en
Discrimination of the native f ...... n including implicit solvation
@nl
P356
P1476
Discrimination of the native f ...... n including implicit solvation
@en
P2093
T Lazaridis
P304
P356
10.1006/JMBI.1999.2685
P407
P577
1999-05-07T00:00:00Z