Decoys 'R' Us: a database of incorrect conformations to improve protein structure prediction
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On side-chain conformational entropy of proteinsA composite score for predicting errors in protein structure modelsA comprehensive analysis of 40 blind protein structure predictions.Improved protein structure selection using decoy-dependent discriminatory functionsA decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.Sampling and scoring: a marriage made in heavenAdvances in structure elucidation of small molecules using mass spectrometryExploratory studies of ab initio protein structure prediction: multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model.Can correct protein models be identified?Decoys for dockingA new generation of statistical potentials for proteins.SVR_CAF: an integrated score function for detecting native protein structures among decoys.A global machine learning based scoring function for protein structure prediction.Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.Atomic hydration potentials using a Monte Carlo Reference State (MCRS) for protein solvation modeling.Benchmarking consensus model quality assessment for protein fold recognition.Detecting local residue environment similarity for recognizing near-native structure models.Are distance-dependent statistical potentials considering three interacting bodies superior to two-body statistical potentials for protein structure prediction?OPUS-PSP: an orientation-dependent statistical all-atom potential derived from side-chain packing.Validation of protein models by a neural network approach.The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment.Internal coordinate molecular dynamics: a foundation for multiscale dynamicsRanking the quality of protein structure models using sidechain based network propertiesMetaMQAP: a meta-server for the quality assessment of protein models.How well can the accuracy of comparative protein structure models be predicted?A knowledge-based structure-discriminating function that requires only main-chain atom coordinates.Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys.Artefacts and biases affecting the evaluation of scoring functions on decoy sets for protein structure prediction.Explicit orientation dependence in empirical potentials and its significance to side-chain modelingA New Hidden Markov Model for Protein Quality Assessment Using Compatibility Between Protein Sequence and Structure.3DRobot: automated generation of diverse and well-packed protein structure decoys.Selecting high quality protein structures from diverse conformational ensembles.Understanding protein structure from a percolation perspective.Splitting statistical potentials into meaningful scoring functions: testing the prediction of near-native structures from decoy conformations.Selection on protein structure, interaction, and sequence.A pairwise residue contact area-based mean force potential for discrimination of native protein structure.A Transferable Coarse Grain Non-bonded Interaction Model For Amino Acids.Potentials 'R' Us web-server for protein energy estimations with coarse-grained knowledge-based potentialsHelix-sheet packing in proteinsNew statistical potential for quality assessment of protein models and a survey of energy functions
P2860
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P2860
Decoys 'R' Us: a database of incorrect conformations to improve protein structure prediction
description
2000 nî lūn-bûn
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2000 թուականի Յուլիսին հրատարակուած գիտական յօդուած
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2000 թվականի հուլիսին հրատարակված գիտական հոդված
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2000年の論文
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2000年学术文章
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2000年学术文章
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2000年学术文章
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2000年学术文章
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2000年学术文章
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2000年學術文章
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name
Decoys 'R' Us: a database of i ...... e protein structure prediction
@ast
Decoys 'R' Us: a database of i ...... e protein structure prediction
@en
type
label
Decoys 'R' Us: a database of i ...... e protein structure prediction
@ast
Decoys 'R' Us: a database of i ...... e protein structure prediction
@en
prefLabel
Decoys 'R' Us: a database of i ...... e protein structure prediction
@ast
Decoys 'R' Us: a database of i ...... e protein structure prediction
@en
P2860
P921
P356
P1433
P1476
Decoys 'R' Us: a database of i ...... e protein structure prediction
@en
P2093
P2860
P304
P356
10.1110/PS.9.7.1399
P577
2000-07-01T00:00:00Z