Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees - Wikidata - awgldk - TriplyDB

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

http://www.wikidata.org/entity/Q28742821

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A functional phylogenomic view of the seed plants Phylogenomic analyses of nuclear genes reveal the evolutionary relationships within the BEP clade and the evidence of positive selection in Poaceae The Amborella Genome and the Evolution of Flowering Plants Fast and accurate branch lengths estimation for phylogenomic trees The Complete Chloroplast Genome of Guadua angustifolia and Comparative Analyses of Neotropical-Paleotropical Bamboos Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes Phylotranscriptomic analysis of the origin and early diversification of land plants A phylogenetic analysis of the grape genus (Vitis L.) reveals broad reticulation and concurrent diversification during neogene and quaternary climate change Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis A timeline for terrestrialization: consequences for the carbon cycle in the Palaeozoic TreeKO: a duplication-aware algorithm for the comparison of phylogenetic trees.Transcriptomic analysis of a psammophyte food crop, sand rice (Agriophyllum squarrosum) and identification of candidate genes essential for sand dune adaptation.A composite genome approach to identify phylogenetically informative data from next-generation sequencing.Fruit evolution and diversification in campanulid angiosperms.Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models.iGTP: a software package for large-scale gene tree parsimony analysis.Are the duplication cost and Robinson-Foulds distance equivalent?Chasing the hare - evaluating the phylogenetic utility of a nuclear single copy gene region at and below species level within the species rich group Peperomia (Piperaceae).Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence A daily-updated tree of (sequenced) life as a reference for genome research.The inference of gene trees with species trees.Combining distance matrices on identical taxon sets for multi-gene analysis with singular value decomposition A class-information-based penalized matrix decomposition for identifying plants core genes responding to abiotic stresses.Improved gene tree error correction in the presence of horizontal gene transfer Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream.TreeFix: statistically informed gene tree error correction using species trees.Reconciliation revisited: handling multiple optima when reconciling with duplication, transfer, and loss.Horizontal gene transfer is a significant driver of gene innovation in dinoflagellates.Causes, consequences and solutions of phylogenetic incongruence.Identification of nuclear low-copy genes and their phylogenetic utility in rosids.Assessing approaches for inferring species trees from multi-copy genes.Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms.Reconciliation of gene and species trees.Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses.Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance.Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (poaceae).Phylogeny of theRosidae: A dense taxon sampling analysis

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

http://www.wikidata.org/entity/Q28742821

description

2011 nî lūn-bûn

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2011 թուականի Մարտին հրատարակուած գիտական յօդուած

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2011 թվականի մարտին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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Systematic Biology

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Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees

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André Wehe

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J Gordon Burleigh

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Mukul S Bansal

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Stefanie Hartmann

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P2860

The cobweb of life revealed by genome-scale estimates of horizontal gene transfer

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

MAFFT version 5: improvement in accuracy of multiple sequence alignment

Rosid radiation and the rapid rise of angiosperm-dominated forests

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

Phytome: a platform for plant comparative genomics.

The neighbor-joining method: a new method for reconstructing phylogenetic trees

Profile hidden Markov models

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10.1093/SYSBIO/SYQ072

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Oliver Eulenstein

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49709820

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21186249

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3038350

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