Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling
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Modeling large regions in proteins: applications to loops, termini, and foldingComputational methods in drug discoveryA Mechanism for Tunable Autoinhibition in the Structure of a Human Ca2+/Calmodulin- Dependent Kinase II HoloenzymeOligomerization Propensity and Flexibility of Yeast Frataxin Studied by X-ray Crystallography and Small-Angle X-ray ScatteringThe Molecular Basis of Iron-induced Oligomerization of Frataxin and the Role of the Ferroxidation Reaction in OligomerizationControl of protein signaling using a computationally designed GTPase/GEF orthogonal pairComputational Design of a Protein-Based Enzyme InhibitorAccurate de novo design of hyperstable constrained peptidesConstraint methods that accelerate free-energy simulations of biomoleculesAdvancements in therapeutically targeting orphan GPCRsLipid receptor S1P₁ activation scheme concluded from microsecond all-atom molecular dynamics simulationsAssessment and challenges of ligand docking into comparative models of G-protein coupled receptorsPaFlexPepDock: parallel ab-initio docking of peptides onto their receptors with full flexibility based on RosettaRosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suiteThe Principles of Ligand Specificity on beta-2-adrenergic receptorExploring functional roles of TRPV1 intracellular domains with unstructured peptide-insertion screeningCoupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand SpecificityA Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and DesignCombined covalent-electrostatic model of hydrogen bonding improves structure prediction with RosettaROSETTA3: an object-oriented software suite for the simulation and design of macromoleculesComputational protein design quantifies structural constraints on amino acid covariationFlexible backbone sampling methods to model and design protein alternative conformationsScientific benchmarks for guiding macromolecular energy function improvementServerification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)Improvements to robotics-inspired conformational sampling in rosettaAssessment of flexible backbone protein design methods for sequence library prediction in the therapeutic antibody Herceptin-HER2 interfaceComparative protein structure modeling using ModellerShortening a loop can increase protein native state entropy.Pyruvate formate-lyase interacts directly with the formate channel FocA to regulate formate translocation.Atomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.Antibody structure determination using a combination of homology modeling, energy-based refinement, and loop prediction.Automated Aufbau of antibody structures from given sequences using Macromoltek's SmrtMolAntibody.Comparative Protein Structure Modeling Using MODELLERProtein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments.Structure prediction for CASP8 with all-atom refinement using Rosetta.PyRosetta: a script-based interface for implementing molecular modeling algorithms using RosettaPractically useful: what the Rosetta protein modeling suite can do for youSpecificity in computational protein designAchievements and Challenges in Computational Protein Design.Cooperative Substrate-Cofactor Interactions and Membrane Localization of the Bacterial Phospholipase A2 (PLA2) Enzyme, ExoU.
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P2860
Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling
description
2009 nî lūn-bûn
@nan
2009 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
name
Sub-angstrom accuracy in prote ...... spired conformational sampling
@ast
Sub-angstrom accuracy in prote ...... spired conformational sampling
@en
Sub-angstrom accuracy in prote ...... spired conformational sampling
@nl
type
label
Sub-angstrom accuracy in prote ...... spired conformational sampling
@ast
Sub-angstrom accuracy in prote ...... spired conformational sampling
@en
Sub-angstrom accuracy in prote ...... spired conformational sampling
@nl
prefLabel
Sub-angstrom accuracy in prote ...... spired conformational sampling
@ast
Sub-angstrom accuracy in prote ...... spired conformational sampling
@en
Sub-angstrom accuracy in prote ...... spired conformational sampling
@nl
P2860
P3181
P356
P1433
P1476
Sub-angstrom accuracy in prote ...... spired conformational sampling
@en
P2093
Daniel J Mandell
P2860
P2888
P3181
P356
10.1038/NMETH0809-551
P407
P577
2009-08-01T00:00:00Z
P5875
P6179
1022615416