pKa calculations suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin
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Cross-protomer interaction with the photoactive site in oligomeric proteorhodopsin complexesMolecular mechanisms for generating transmembrane proton gradientsFactors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.Pressure dependence of the photocycle kinetics of bacteriorhodopsinProton binding within a membrane protein by a protonated water clusterA delocalized proton-binding site within a membrane proteinProBLM web server: protein and membrane placement and orientation package.Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes.Halorhodopsin pumps Cl- and bacteriorhodopsin pumps protons by a common mechanism that uses conserved electrostatic interactions.Proton storage site in bacteriorhodopsin: new insights from quantum mechanics/molecular mechanics simulations of microscopic pK(a) and infrared spectraStructures and spectral signatures of protonated water networks in bacteriorhodopsin.X-ray diffraction of bacteriorhodopsin photocycle intermediates.H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulationsProteins in action monitored by time-resolved FTIR spectroscopy.Storage of an excess proton in the hydrogen-bonded network of the d-pathway of cytochrome C oxidase: identification of a protonated water cluster.GPCR activation: protonation and membrane potentialA fast and accurate computational approach to protein ionization.Amino acids with an intermolecular proton bond as proton storage site in bacteriorhodopsin.Structural changes due to the deprotonation of the proton release group in the M-photointermediate of bacteriorhodopsin as revealed by time-resolved FTIR spectroscopy.The energetics of the primary proton transfer in bacteriorhodopsin revisited: it is a sequential light-induced charge separation after allDynamics of water molecules in the bacteriorhodopsin trimer in explicit lipid/water environment.The assignment of the different infrared continuum absorbance changes observed in the 3000-1800-cm(-1) region during the bacteriorhodopsin photocycle.Theoretical IR spectroscopy based on QM/MM calculations provides changes in charge distribution, bond lengths, and bond angles of the GTP ligand induced by the Ras-protein.Dynamics of voltage profile in enzymatic ion transporters, demonstrated in electrokinetics of proton pumping rhodopsin.Nucleophile activation in PD...(D/E)xK metallonucleases: an experimental and computational pK(a) study.pKa predictions for proteins, RNAs, and DNAs with the Gaussian dielectric function using DelPhi pKa.MCCE2: improving protein pKa calculations with extensive side chain rotamer sampling.Analysis of the electrochemistry of hemes with E(m)s spanning 800 mV.Crystal structures of bR(D85S) favor a model of bacteriorhodopsin as a hydroxyl-ion pump.Continuum Electrostatic Calculation on Bovine Rhodopsin: Protonation and the Effect of the Membrane Potential.Structure-based pKa calculations using continuum electrostatics methods.Allosteric Effects of the Proton Donor on the Microbial Proton Pump ProteorhodopsinThree ways in, one way out: water dynamics in the trans-membrane domains of the inner membrane translocase AcrBFunctional waters in intraprotein proton transfer monitored by FTIR difference spectroscopy
P2860
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P2860
pKa calculations suggest storage of an excess proton in a hydrogen-bonded water network in bacteriorhodopsin
description
2001 nî lūn-bûn
@nan
2001 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2001 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2001年の論文
@ja
2001年論文
@yue
2001年論文
@zh-hant
2001年論文
@zh-hk
2001年論文
@zh-mo
2001年論文
@zh-tw
2001年论文
@wuu
name
pKa calculations suggest stora ...... r network in bacteriorhodopsin
@ast
pKa calculations suggest stora ...... r network in bacteriorhodopsin
@en
type
label
pKa calculations suggest stora ...... r network in bacteriorhodopsin
@ast
pKa calculations suggest stora ...... r network in bacteriorhodopsin
@en
prefLabel
pKa calculations suggest stora ...... r network in bacteriorhodopsin
@ast
pKa calculations suggest stora ...... r network in bacteriorhodopsin
@en
P2093
P356
P1476
pKa calculations suggest stora ...... r network in bacteriorhodopsin
@en
P2093
Donald Bashford
Hartmut Luecke
Velin Z Spassov
P304
P356
10.1006/JMBI.2001.4902
P407
P577
2001-09-01T00:00:00Z