Integrating protein structural dynamics and evolutionary analysis with Bio3D. - Wikidata - awgldk - TriplyDB

Integrating protein structural dynamics and evolutionary analysis with Bio3D.

Integrating protein structural dynamics and evolutionary analysis with Bio3D.

http://www.wikidata.org/entity/Q30612041

about

Molecular Dynamics of "Fuzzy" Transcriptional Activator-Coactivator Interactions Mycocerosic acid synthase exemplifies the architecture of reducing polyketide synthases Structure of a pathogen effector reveals the enzymatic mechanism of a novel acetyltransferase family The Principles of Ligand Specificity on beta-2-adrenergic receptor The Structure of the Plakin Domain of Plectin Reveals an Extended Rod-like Shape.Databases, Repositories, and Other Data Resources in Structural Biology.Emerging Computational Methods for the Rational Discovery of Allosteric Drugs.STRUM: structure-based prediction of protein stability changes upon single-point mutation.Online interactive analysis of protein structure ensembles with Bio3D-web.An optimal distance cutoff for contact-based Protein Structure Networks using side-chain centers of mass.Discovery of a novel splice variant of Fcar (CD89) unravels sequence segments necessary for efficient secretion: A story of bad signal peptides and good ones that nevertheless do not make it.Dissecting protein architecture with communication blocks and communicating segment pairs.Dynamic Coupling and Allosteric Networks in the α Subunit of Heterotrimeric G Proteins.Two Deafness-Causing Actin Mutations (DFNA20/26) Have Allosteric Effects on the Actin Structure.Conformational selectivity in cytochrome P450 redox partner interactions The Molecular Mechanism of P2Y1 Receptor Activation Computational and biochemical characterization of two partially overlapping interfaces and multiple weak-affinity K-Ras dimers Crystal structures of agonist-bound human cannabinoid receptor CB1.Structural and Molecular Mechanisms of Cytokine-Mediated Endocrine Resistance in Human Breast Cancer Cells.MDplot: Visualise Molecular Dynamics Computational investigation of conformational variability and allostery in cathepsin K and other related peptidases.Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web.Molecular Dynamics Simulations Reveal Isoform Specific Contact Dynamics between the Plexin Rho GTPase Binding Domain (RBD) and Small Rho GTPases Rac1 and Rnd1.Multiscale design of coarse-grained elastic network-based potentials for the μ opioid receptor.Investigating Ebola virus pathogenicity using molecular dynamics.Evaluating the effect of mutations and ligand binding on transthyretin homotetramer dynamics.Rapid Characterization of Allosteric Networks with Ensemble Normal Mode Analysis Mechanism of mRNA-STAR domain interaction: Molecular dynamics simulations of Mammalian Quaking STAR protein.Rational design of novel, fluorescent, tagged glutamic acid dendrimers with different terminal groups and in silico analysis of their properties.In silico identification of rescue sites by double force scanning.Navigating the conformational landscape of G protein-coupled receptor kinases during allosteric activation.Allosteric modulation of cardiac myosin dynamics by omecamtiv mecarbil.Enhanced spontaneous DNA twisting/bending fluctuations unveiled by fluorescence lifetime distributions promote mismatch recognition by the Rad4 nucleotide excision repair complex.Structural analysis of protein tyrosine phosphatase 1B reveals potentially druggable allosteric binding sites.Approaches for Differentiation and Interconverting GPCR Agonists and Antagonists.Normal mode analysis as a method to derive protein dynamics information from the Protein Data Bank.PAK4 crystal structures suggest unusual kinase conformational movements.Visualizing correlated motion with HDBSCAN clustering.Role of N-glycosylation in activation of proMMP-9. A molecular dynamics simulations study.Jumping between protein conformers using normal modes.

P2860

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P2860

Integrating protein structural dynamics and evolutionary analysis with Bio3D.

http://www.wikidata.org/entity/Q30612041

description

2014 nî lūn-bûn

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2014 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2014 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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name

Integrating protein structural dynamics and evolutionary analysis with Bio3D.

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Integrating protein structural dynamics and evolutionary analysis with Bio3D.

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Integrating protein structural dynamics and evolutionary analysis with Bio3D.

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Integrating protein structural dynamics and evolutionary analysis with Bio3D.

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Integrating protein structural dynamics and evolutionary analysis with Bio3D.

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Integrating protein structural dynamics and evolutionary analysis with Bio3D.

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BMC Bioinformatics

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Integrating protein structural dynamics and evolutionary analysis with Bio3D.

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P2093

Guido Scarabelli

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Lars Skjærven

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P2860

Bioconductor: open software development for computational biology and bioinformatics

Community structure in social and biological networks

HMMER web server: interactive sequence similarity searching

Crystal structure of the β2 adrenergic receptor-Gs protein complex

WEBnm@: a web application for normal mode analyses of proteins

Basic local alignment search tool

Intrinsic motions along an enzymatic reaction trajectory

Divergent evolution of protein conformational dynamics in dihydrofolate reductase.

Structure, dynamics, and catalytic function of dihydrofolate reductase

Effective harmonic potentials: insights into the internal cooperativity and sequence-specificity of protein dynamics

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s12859-014-0399-6

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scholarly article

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10.1186/S12859-014-0399-6

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15

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