customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search.
about
Proteogenomic characterization of human colon and rectal cancerUsing Galaxy-P to leverage RNA-Seq for the discovery of novel protein variationsProteogenomics: concepts, applications and computational strategiesExploring Human Diseases and Biological Mechanisms by Protein Structure Prediction and Modeling.Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data.Leveraging the complementary nature of RNA-Seq and shotgun proteomics data.proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data.Next Generation Sequencing Data and Proteogenomics.Choosing an Optimal Database for Protein Identification from Tandem Mass Spectrometry Data.Detecting protein variants by mass spectrometry: a comprehensive study in cancer cell-lines.Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.pwOmics: an R package for pathway-based integration of time-series omics data using public database knowledge.MSProGene: integrative proteogenomics beyond six-frames and single nucleotide polymorphisms.Proteomic analysis of colon and rectal carcinoma using standard and customized databasesIn Silico Identification of Protein Disulfide Isomerase Gene Families in the De Novo Assembled Transcriptomes of Four Different Species of the Genus Conus.PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.Decoding neuroproteomics: integrating the genome, translatome and functional anatomyEffective Leveraging of Targeted Search Spaces for Improving Peptide Identification in Tandem Mass Spectrometry Based Proteomics.PGx: Putting Peptides to BEDProteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic VariationJUMPg: An Integrative Proteogenomics Pipeline Identifying Unannotated Proteins in Human Brain and Cancer Cells.Proteogenomics in microbiology: taking the right turn at the junction of genomics and proteomics.Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome AnnotationIdentification of differentially expressed splice variants by the proteogenomic pipeline Splicify.Proteogenomics approaches for studying cancer biology and their potential in the identification of acute myeloid leukemia biomarkers.Proteogenomics from a bioinformatics angle: A growing field.Proteogenomic Analysis of Single Amino Acid Polymorphisms in Cancer Research.Methods, Tools and Current Perspectives in Proteogenomics.Mutant Proteogenomics.Integrating transcriptome and proteome profiling: Strategies and applications.Proteogenomic Tools and Approaches to Explore Protein Coding Landscapes of Eukaryotic Genomes.Polymorphism-aware protein databases - a prerequisite for an unbiased proteomic analysis of natural populations.Harnessing the power of proteomics for identification of oncogenic, druggable signalling pathways in cancer.GAPP: A Proteogenomic Software for Genome Annotation and Global Profiling of Post-translational Modifications in Prokaryotes.Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer.Top-down-assisted bottom-up method for homologous protein sequencing: hemoglobin from 33 bird species.sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments.An Accessible Proteogenomics Informatics Resource for Cancer Researchers.Detection of proteome diversity resulted from alternative splicing is limited by trypsin cleavage specificity.Onco-proteogenomics: Multi-omics level data integration for accurate phenotype prediction.
P2860
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P2860
customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search.
description
2013 nî lūn-bûn
@nan
2013 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2013 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
name
customProDB: an R package to g ...... eq data for proteomics search.
@ast
customProDB: an R package to g ...... eq data for proteomics search.
@en
type
label
customProDB: an R package to g ...... eq data for proteomics search.
@ast
customProDB: an R package to g ...... eq data for proteomics search.
@en
prefLabel
customProDB: an R package to g ...... eq data for proteomics search.
@ast
customProDB: an R package to g ...... eq data for proteomics search.
@en
P2860
P356
P1433
P1476
customProDB: an R package to g ...... eq data for proteomics search.
@en
P2093
Bing Zhang
Xiaojing Wang
P2860
P304
P356
10.1093/BIOINFORMATICS/BTT543
P407
P577
2013-09-20T00:00:00Z