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Advances in Homology Protein Structure ModelingA smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressionsImproved prediction of protein side-chain conformations with SCWRL4Scientific benchmarks for guiding macromolecular energy function improvementA simple model of backbone flexibility improves modeling of side-chain conformational variabilityA graph-theory algorithm for rapid protein side-chain predictionCyclic coordinate descent: A robotics algorithm for protein loop closure.LEAP: highly accurate prediction of protein loop conformations by integrating coarse-grained sampling and optimized energy scores with all-atom refinement of backbone and side chainsProtein side-chain modeling with a protein-dependent optimized rotamer library.Protein structure prediction: assembly of secondary structure elements by basin-hopping.3d interaction homology: The structurally known rotamers of tyrosine derive from a surprisingly limited set of information-rich hydropathic interaction environments described by maps.Explicit orientation dependence in empirical potentials and its significance to side-chain modelingAn improved hybrid global optimization method for protein tertiary structure prediction.Beyond rotamers: a generative, probabilistic model of side chains in proteins.Protein side-chain packing problem: is there still room for improvement?Comprehensive structural and functional characterization of the human kinome by protein structure modeling and ligand virtual screening.Protein side chain modeling with orientation-dependent atomic force fields derived by series expansionsPrediction of protein mutation effects based on dehydration and hydrogen bonding - A large-scale study.Fast side chain replacement in proteins using a coarse-grained approach for evaluating the effects of mutation during evolution.RASP: rapid modeling of protein side chain conformations.A protein-dependent side-chain rotamer library.Homology modeling a fast tool for drug discovery: current perspectives.Binary image representation of a ligand binding site: its application to efficient sampling of a conformational ensembleMapping the distribution of packing topologies within protein interiors shows predominant preference for specific packing motifsImproved side-chain prediction accuracy using an ab initio potential energy function and a very large rotamer libraryPrediction of side-chain conformations on protein surfaces.IRECS: a new algorithm for the selection of most probable ensembles of side-chain conformations in protein models.SIDEpro: a novel machine learning approach for the fast and accurate prediction of side-chain conformations.Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling.Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target.Flat-Bottom Strategy for Improved Accuracy in Protein Side-Chain Placements.Protein side chain conformation predictions with an MMGBSA energy function.Configurational-bias sampling technique for predicting side-chain conformations in proteinsGEM: a Gaussian Evolutionary Method for predicting protein side-chain conformationsOPUS-Rota: a fast and accurate method for side-chain modeling.Energy functions in de novo protein design: current challenges and future prospects.Improving computational efficiency and tractability of protein design using a piecemeal approach. A strategy for parallel and distributed protein design.An overview of recent developments in GPCR modelling: methods and validation.Fast and accurate prediction of protein side-chain conformations.How do side chains orient globally in protein structures?
P2860
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P2860
description
2002 nî lūn-bûn
@nan
2002 թուականի Փետրուարին հրատարակուած գիտական յօդուած
@hyw
2002 թվականի փետրվարին հրատարակված գիտական հոդված
@hy
2002年の論文
@ja
2002年論文
@yue
2002年論文
@zh-hant
2002年論文
@zh-hk
2002年論文
@zh-mo
2002年論文
@zh-tw
2002年论文
@wuu
name
Side-chain modeling with an optimized scoring function.
@ast
Side-chain modeling with an optimized scoring function.
@en
type
label
Side-chain modeling with an optimized scoring function.
@ast
Side-chain modeling with an optimized scoring function.
@en
prefLabel
Side-chain modeling with an optimized scoring function.
@ast
Side-chain modeling with an optimized scoring function.
@en
P2860
P356
P1433
P1476
Side-chain modeling with an optimized scoring function.
@en
P2093
Shide Liang
P2860
P304
P356
10.1110/PS.24902
P577
2002-02-01T00:00:00Z