Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
about
Detecting microRNA binding and siRNA off-target effects from expression dataDe novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysisDistinguishing direct versus indirect transcription factor-DNA interactions.Integrating Epigenomics into the Understanding of Biomedical InsightThermodynamic state ensemble models of cis-regulationPeakRegressor identifies composite sequence motifs responsible for STAT1 binding sites and their potential rSNPsA biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding dataConnecting protein structure with predictions of regulatory sites.Linking proteomic and transcriptional data through the interactome and epigenome reveals a map of oncogene-induced signaling.Discrimination between thermodynamic models of cis-regulation using transcription factor occupancy data.Learning protein-DNA interaction landscapes by integrating experimental data through computational models.fREDUCE: detection of degenerate regulatory elements using correlation with expression.MixMir: microRNA motif discovery from gene expression data using mixed linear models.Computational Methods for CLIP-seq Data Processing.UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactionsRNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCEPrecise physical models of protein-DNA interaction from high-throughput data.RCK: accurate and efficient inference of sequence- and structure-based protein-RNA binding models from RNAcompete data.iSLIM: a comprehensive approach to mapping and characterizing gene regulatory networksCSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) dataComputational analyses of eukaryotic promotersDissecting complex transcriptional responses using pathway-level scores based on prior informationIdentification of direct target genes using joint sequence and expression likelihood with application to DAF-16c-REDUCE: incorporating sequence conservation to detect motifs that correlate with expression.A primer on regression methods for decoding cis-regulatory logic.Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flowerSpatio-temporal dynamics of yeast mitochondrial biogenesis: transcriptional and post-transcriptional mRNA oscillatory modules.Modeling the quantitative specificity of DNA-binding proteins from example binding sites.BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factorsVariable structure motifs for transcription factor binding sites.MochiView: versatile software for genome browsing and DNA motif analysis.The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based high-throughput data.Sequence analysis of chromatin immunoprecipitation data for transcription factors.GraphProt: modeling binding preferences of RNA-binding proteins.Predicting DNA-binding specificities of eukaryotic transcription factorsAn effective model for natural selection in promotersGenome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liverComputational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information.A linear model for transcription factor binding affinity prediction in protein binding microarrays.
P2860
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P2860
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE.
description
2006 nî lūn-bûn
@nan
2006 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
Statistical mechanical modelin ...... ccupancy data by MatrixREDUCE.
@ast
Statistical mechanical modelin ...... ccupancy data by MatrixREDUCE.
@en
type
label
Statistical mechanical modelin ...... ccupancy data by MatrixREDUCE.
@ast
Statistical mechanical modelin ...... ccupancy data by MatrixREDUCE.
@en
prefLabel
Statistical mechanical modelin ...... ccupancy data by MatrixREDUCE.
@ast
Statistical mechanical modelin ...... ccupancy data by MatrixREDUCE.
@en
P356
P1433
P1476
Statistical mechanical modelin ...... ccupancy data by MatrixREDUCE.
@en
P2093
Barrett C Foat
Harmen J Bussemaker
P304
P356
10.1093/BIOINFORMATICS/BTL223
P407
P577
2006-07-01T00:00:00Z