Toward the automated generation of genome-scale metabolic networks in the SEED. - Wikidata - awgldk - TriplyDB

Toward the automated generation of genome-scale metabolic networks in the SEED.

Toward the automated generation of genome-scale metabolic networks in the SEED.

http://www.wikidata.org/entity/Q33282913

about

Improving microbial genome annotations in an integrated database context The RAST Server: rapid annotations using subsystems technology A widespread peroxiredoxin-like domain present in tumor suppression- and progression-implicated proteins BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery Nicotinamide mononucleotide synthetase is the key enzyme for an alternative route of NAD biosynthesis in Francisella tularensis Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network.MultiMetEval: comparative and multi-objective analysis of genome-scale metabolic models Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species Reconstruction of biochemical networks in microorganisms Whole-genome metabolic network reconstruction and constraint-based modeling SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models Cautions about the reliability of pairwise gene correlations based on expression data.Genome-scale models of bacterial metabolism: reconstruction and applications.Machine learning methods for metabolic pathway prediction.Genome-wide discovery of missing genes in biological pathways of prokaryotes.Web-based metabolic network visualization with a zooming user interface.The common ground of genomics and systems biology.In silico models of cancer A novel protein kinase-like domain in a selenoprotein, widespread in the tree of life.A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica.Likelihood-based gene annotations for gap filling and quality assessment in genome-scale metabolic models Evaluating the consistency of gene sets used in the analysis of bacterial gene expression data HAMAP in 2013, new developments in the protein family classification and annotation system Semi-automated curation of metabolic models via flux balance analysis: a case study with Mycoplasma gallisepticum Inferring transcription factor collaborations in gene regulatory networks TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei Reconstructing genome-scale metabolic models with merlin.UniPathway: a resource for the exploration and annotation of metabolic pathways Application of Top-Down and Bottom-up Systems Approaches in Ruminant Physiology and Metabolism.Analysis of the complete genome sequence of Nocardia seriolae UTF1, the causative agent of fish nocardiosis: The first reference genome sequence of the fish pathogenic Nocardia species.From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model Draft Genome Sequence of Agarivorans albus Strain MKT 106T, an Agarolytic Marine Bacterium.iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations.A novel proposal of a simplified bacterial gene set and the neo-construction of a general minimized metabolic network.High-fat diet determines the composition of the murine gut microbiome independently of obesity.Systems metabolic engineering: genome-scale models and beyond.Graph methods for the investigation of metabolic networks in parasitology.Genome-scale metabolic networks.The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms.

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Toward the automated generation of genome-scale metabolic networks in the SEED.

http://www.wikidata.org/entity/Q33282913

description

2007 nî lūn-bûn

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2007 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2007 թվականի ապրիլին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年论文

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name

Toward the automated generation of genome-scale metabolic networks in the SEED.

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Toward the automated generation of genome-scale metabolic networks in the SEED.

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Toward the automated generation of genome-scale metabolic networks in the SEED.

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type

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Toward the automated generation of genome-scale metabolic networks in the SEED.

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Toward the automated generation of genome-scale metabolic networks in the SEED.

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Toward the automated generation of genome-scale metabolic networks in the SEED.

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prefLabel

Toward the automated generation of genome-scale metabolic networks in the SEED.

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Toward the automated generation of genome-scale metabolic networks in the SEED.

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Toward the automated generation of genome-scale metabolic networks in the SEED.

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BMC Bioinformatics

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Toward the automated generation of genome-scale metabolic networks in the SEED.

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Aaron Best

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John Gould

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Kevin Formsma

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Matthew DeJongh

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Matthew Rycenga

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Paul Boillot

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P2860

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation.

metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases

IdentiCS--identification of coding sequence and in silico reconstruction of the metabolic network directly from unannotated low-coverage bacterial genome sequence

Modeling Lactococcus lactis using a genome-scale flux model.

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

The KEGG resource for deciphering the genome

Toward metabolic phenomics: analysis of genomic data using flux balances

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