Correcting pervasive errors in RNA crystallography through enumerative structure prediction. - Wikidata - awgldk - TriplyDB

Correcting pervasive errors in RNA crystallography through enumerative structure prediction.

Correcting pervasive errors in RNA crystallography through enumerative structure prediction.

http://www.wikidata.org/entity/Q34497694

about

Doing molecular biophysics: finding, naming, and picturing signal within complexity Crystallographic model validation: from diagnosis to healing T box RNA decodes both the information content and geometry of tRNA to affect gene expression Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine A G-quadruplex–containing RNA activates fluorescence in a GFP-like fluorophore Structural basis for activity of highly efficient RNA mimics of green fluorescent protein Structure of the E. coli ribosome-EF-Tu complex at <3 Å resolution by Cs-corrected cryo-EM Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)Advances in Rosetta structure prediction for difficult molecular-replacement problems.Atomic-accuracy prediction of protein loop structures through an RNA-inspired Ansatz.Ribosome rearrangements at the onset of translational bypassing Deformable elastic network refinement for low-resolution macromolecular crystallography.Crystal structure of a eukaryotic group II intron lariat New tools provide a second look at HDV ribozyme structure, dynamics and cleavage.Crystal structure of the Varkud satellite ribozyme.RNA approaches the B-form in stacked single strand dinucleotide contexts.Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases.RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.Cryo-EM of ribosomal 80S complexes with termination factors reveals the translocated cricket paralysis virus IRES.Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.Structures and Energetics of Four Adjacent G·U Pairs That Stabilize an RNA Helix.Protocols for Molecular Modeling with Rosetta3 and RosettaScripts Structure of the 70S ribosome from human pathogen Staphylococcus aureus.Progress and Current Challenges in Modeling Large RNAs.Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association.Mefloquine targets the Plasmodium falciparum 80S ribosome to inhibit protein synthesis.Crystallographic characterization of the ribosomal binding site and molecular mechanism of action of Hygromycin A.Modeling Small Noncanonical RNA Motifs with the Rosetta FARFAR Server.RNA Structure Refinement Using the ERRASER-Phenix Pipeline.The near-atomic cryoEM structure of a flexible filamentous plant virus shows homology of its coat protein with nucleoproteins of animal viruses.A general mechanism of ribosome dimerization revealed by single-particle cryo-electron microscopy Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF.The pathway to GTPase activation of elongation factor SelB on the ribosome.A novel pleuromutilin antibacterial compound, its binding mode and selectivity mechanism.Structure of the complete bacterial SRP Alu domain.CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing MolProbity: More and better reference data for improved all-atom structure validation.

P2860

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P2860

Correcting pervasive errors in RNA crystallography through enumerative structure prediction.

http://www.wikidata.org/entity/Q34497694

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2012 nî lūn-bûn

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2012 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

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2012 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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Fang-Chieh Chou

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Parin Sripakdeevong

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Sergey M Dibrov

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Thomas Hermann

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P2860

A new generation of crystallographic validation tools for the protein data bank

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program

MolProbity: all-atom structure validation for macromolecular crystallography

PHENIX: a comprehensive Python-based system for macromolecular structure solution

Automated de novo prediction of native-like RNA tertiary structures

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

Use of TLS parameters to model anisotropic displacements in macromolecular refinement

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

Improved molecular replacement by density- and energy-guided protein structure optimization

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10.1038/NMETH.2262

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1110.0276

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3531565

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