Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire - Wikidata - awgldk - TriplyDB

Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire

Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire

http://www.wikidata.org/entity/Q34565009

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Evaluation of algorithm performance in ChIP-seq peak detection Scaffolding a Caenorhabditis nematode genome with RNA-seq Corepressor protein CDYL functions as a molecular bridge between polycomb repressor complex 2 and repressive chromatin mark trimethylated histone lysine 27 Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data MED19 and MED26 are synergistic functional targets of the RE1 silencing transcription factor in epigenetic silencing of neuronal gene expression Complex architecture and regulated expression of the Sox2ot locus during vertebrate development MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites The Transcription Repressor REST in Adult Neurons: Physiology, Pathology, and Diseases(1,2,3)Specific silencing of the REST target genes in insulin-secreting cells uncovers their participation in beta cell survival Rest mutant zebrafish swim erratically and display atypical spatial preferences.Repressor element-1 silencing transcription factor (REST)-dependent epigenetic remodeling is critical to ischemia-induced neuronal death The bifunctional microRNA miR-9/miR-9* regulates REST and CoREST and is downregulated in Huntington's disease A highly conserved molecular switch binds MSY-3 to regulate myogenin repression in postnatal muscle REST/NRSF governs the expression of dense-core vesicle gliosecretion in astrocytes Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages Genome-wide mapping of in vivo protein-DNA interactions Regeneration in the era of functional genomics and gene network analysis.The Caenorhabditis elegans vulva: a post-embryonic gene regulatory network controlling organogenesis Genome-wide use of high- and low-affinity Tbrain transcription factor binding sites during echinoderm development REST and CoREST modulate neuronal subtype specification, maturation and maintenance.REST regulates distinct transcriptional networks in embryonic and neural stem cells.Tissue and process specific microRNA-mRNA co-expression in mammalian development and malignancy.BayesPeak: Bayesian analysis of ChIP-seq data.Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation.A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments MER41 repeat sequences contain inducible STAT1 binding sites Transcriptional activation of REST by Sp1 in Huntington's disease models NRSF-dependent epigenetic mechanisms contribute to programming of stress-sensitive neurons by neonatal experience, promoting resilience The transcription factor NRSF contributes to epileptogenesis by selective repression of a subset of target genes.Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data Regulation of protocadherin gene expression by multiple neuron-restrictive silencer elements scattered in the gene cluster.Corepressor for element-1-silencing transcription factor preferentially mediates gene networks underlying neural stem cell fate decisions.Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks C-terminal domain small phosphatase 1 and MAP kinase reciprocally control REST stability and neuronal differentiation.Mechanisms of epileptogenesis: a convergence on neural circuit dysfunction.Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction.Neuronal transcriptional repressor REST suppresses an Atoh7-independent program for initiating retinal ganglion cell development Silencer-delimited transgenesis: NRSE/RE1 sequences promote neural-specific transgene expression in a NRSF/REST-dependent manner.Ets homologous factor regulates pathways controlling response to injury in airway epithelial cells

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Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire

http://www.wikidata.org/entity/Q34565009

description

2006 nî lūn-bûn

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2006 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

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2006 թվականի սեպտեմբերին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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name

Comparative genomics modeling ...... ites to genome-wide repertoire

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Comparative genomics modeling ...... ites to genome-wide repertoire

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Comparative genomics modeling ...... ites to genome-wide repertoire

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Comparative genomics modeling ...... ites to genome-wide repertoire

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Comparative genomics modeling ...... ites to genome-wide repertoire

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Comparative genomics modeling ...... ites to genome-wide repertoire

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Comparative genomics modeling ...... ites to genome-wide repertoire

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Comparative genomics modeling ...... ites to genome-wide repertoire

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Comparative genomics modeling ...... ites to genome-wide repertoire

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Genome Research

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Comparative genomics modeling ...... ites to genome-wide repertoire

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Ali Mortazavi

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Barbara Wold

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Evonne Chen Leeper Thompson

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Richard M Myers

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Sarah T Garcia

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P2860

Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation

CoREST: a functional corepressor required for regulation of neural-specific gene expression

A broad role for the zinc finger protein ZNF202 in human lipid metabolism

REST: a mammalian silencer protein that restricts sodium channel gene expression to neurons

neurogenins, a novel family of atonal-related bHLH transcription factors, are putative mammalian neuronal determination genes that reveal progenitor cell heterogeneity in the developing CNS and PNS

The neuron-restrictive silencer factor (NRSF): a coordinate repressor of multiple neuron-specific genes

A zinc finger protein that represses transcription of the human MHC class II gene, DPA

NeuroD2 and neuroD3: distinct expression patterns and transcriptional activation potentials within the neuroD gene family

The transcriptional repressor REST determines the cell-specific expression of the human MAPK8IP1 gene encoding IB1 (JIP-1)

A gene atlas of the mouse and human protein-encoding transcriptomes

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1208-1221

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scholarly article

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10.1101/GR.4997306

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10

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16

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6826651

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16963704

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1581430

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