GAGE-B: an evaluation of genome assemblers for bacterial organisms - Wikidata - awgldk - TriplyDB

GAGE-B: an evaluation of genome assemblers for bacterial organisms

GAGE-B: an evaluation of genome assemblers for bacterial organisms

http://www.wikidata.org/entity/Q34715928

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Population and genomic analysis of the genus Halorubrum Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine Best practices for evaluating single nucleotide variant calling methods for microbial genomics Comparison of genome sequencing technology and assembly methods for the analysis of a GC-rich bacterial genome.Swabs to genomes: a comprehensive workflow Synthetic long-read sequencing reveals intraspecies diversity in the human microbiome Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing Whole-genome sequencing in outbreak analysis Optimized Illumina PCR-free library preparation for bacterial whole genome sequencing and analysis of factors influencing de novo assembly An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella The combination of direct and paired link graphs can boost repetitive genome assembly.Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia Automated ensemble assembly and validation of microbial genomes.A comparative evaluation of genome assembly reconciliation tools.Kraken: ultrafast metagenomic sequence classification using exact alignments Reducing assembly complexity of microbial genomes with single-molecule sequencing The draft assembly of the radically organized Stylonychia lemnae macronuclear genome.GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers.CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers.The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.Assessment of de novo assemblers for draft genomes: a case study with fungal genomes Finishing bacterial genome assemblies with Mix.Completing bacterial genome assemblies: strategy and performance comparisons.A method enabling high-throughput sequencing of human cytomegalovirus complete genomes from clinical isolates SAGE: String-overlap Assembly of GEnomes.Impact of analytic provenance in genome analysis.QuorUM: An Error Corrector for Illumina Reads.dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.Potential and pitfalls of eukaryotic metagenome skimming: a test case for lichens.LASER: Large genome ASsembly EvaluatoR HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads.Genome Analysis of Listeria monocytogenes Sequence Type 8 Strains Persisting in Salmon and Poultry Processing Environments and Comparison with Related Strains.Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island.rnaQUAST: a quality assessment tool for de novo transcriptome assemblies.Finishing monkeypox genomes from short reads: assembly analysis and a neural network method.BASE: a practical de novo assembler for large genomes using long NGS reads.in silico Whole Genome Sequencer & Analyzer (iWGS): A Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies.Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads.MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation.Whole-genome sequencing in bacteriology: state of the art.

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

http://www.wikidata.org/entity/Q34715928

description

2013 nî lūn-bûn

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2013 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2013 թվականի մայիսին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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name

GAGE-B: an evaluation of genome assemblers for bacterial organisms

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

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type

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

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GAGE-B: an evaluation of genome assemblers for bacterial organisms

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Daniela Puiu

http://www.w3.org/2001/XMLSchema#string

Luke J Tallon

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Qi Su

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Stefan Canzar

http://www.w3.org/2001/XMLSchema#string

Tanja Magoc

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Xinyue Liu

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P2860

Minimus: a fast, lightweight genome assembler

A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Efficient de novo assembly of large genomes using compressed data structures

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

De novo assembly of human genomes with massively parallel short read sequencing

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

Versatile and open software for comparing large genomes

Fast gapped-read alignment with Bowtie 2

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

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1718-1725

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scholarly article

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10.1093/BIOINFORMATICS/BTT273

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14

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Stephan Pabinger

Steven Salzberg

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2013-05-10T00:00:00Z

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236691609

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3702249

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