Extensive low-affinity transcriptional interactions in the yeast genome
about
Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitnessActivity motifs reveal principles of timing in transcriptional control of the yeast metabolic networkDetecting microRNA binding and siRNA off-target effects from expression dataStructural and biophysical analysis of the DNA binding properties of myelin transcription factor 1A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promotersHigh-resolution DNA-binding specificity analysis of yeast transcription factors.De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysisMassively parallel measurements of molecular interaction kinetics on a microfluidic platform.Distinguishing direct versus indirect transcription factor-DNA interactions.A predictive model of the oxygen and heme regulatory network in yeastCompact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificitiesA biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding dataGenome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiaeRAP: accurate and fast motif finding based on protein-binding microarray data.Learning protein-DNA interaction landscapes by integrating experimental data through computational models.DISPARE: DIScriminative PAttern REfinement for Position Weight MatricesBuilding accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCECombining transcription factor binding affinities with open-chromatin data for accurate gene expression predictionFrequent gain and loss of functional transcription factor binding sites.Evolution and selection in yeast promoters: analyzing the combined effect of diverse transcription factor binding sitesAnalysis of combinatorial cis-regulation in synthetic and genomic promotersFunctional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryosA primer on regression methods for decoding cis-regulatory logic.Transcriptional interaction-assisted identification of dynamic nucleosome positioningWhere does mediator bind in vivo?Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flowerBayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factorsNon-consensus GLI binding sites in Hedgehog target gene regulation.Variable structure motifs for transcription factor binding sites.Conservation and regulatory associations of a wide affinity range of mouse transcription factor binding sitesBlurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not localKnowledge-guided gene ranking by coordinative component analysis.Most transcription factor binding sites are in a few mosaic classes of the human genome.MER41 repeat sequences contain inducible STAT1 binding sitesCorrelated changes between regulatory cis elements and condition-specific expression in paralogous gene families.Fungal regulatory evolution: cis and trans in the balance.Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression.Location analysis for the estrogen receptor-alpha reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements.Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast.Novel computational analysis of protein binding array data identifies direct targets of Nkx2.2 in the pancreas.
P2860
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P2860
Extensive low-affinity transcriptional interactions in the yeast genome
description
2006 nî lūn-bûn
@nan
2006 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
Extensive low-affinity transcriptional interactions in the yeast genome
@ast
Extensive low-affinity transcriptional interactions in the yeast genome
@en
Extensive low-affinity transcriptional interactions in the yeast genome
@nl
type
label
Extensive low-affinity transcriptional interactions in the yeast genome
@ast
Extensive low-affinity transcriptional interactions in the yeast genome
@en
Extensive low-affinity transcriptional interactions in the yeast genome
@nl
prefLabel
Extensive low-affinity transcriptional interactions in the yeast genome
@ast
Extensive low-affinity transcriptional interactions in the yeast genome
@en
Extensive low-affinity transcriptional interactions in the yeast genome
@nl
P2860
P356
P1433
P1476
Extensive low-affinity transcriptional interactions in the yeast genome
@en
P2093
Amos Tanay
P2860
P304
P356
10.1101/GR.5113606
P577
2006-06-29T00:00:00Z