Extensive low-affinity transcriptional interactions in the yeast genome - Wikidata - awgldk - TriplyDB

Extensive low-affinity transcriptional interactions in the yeast genome

Extensive low-affinity transcriptional interactions in the yeast genome

http://www.wikidata.org/entity/Q34881942

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Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network Detecting microRNA binding and siRNA off-target effects from expression data Structural and biophysical analysis of the DNA binding properties of myelin transcription factor 1 A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters High-resolution DNA-binding specificity analysis of yeast transcription factors.De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis Massively parallel measurements of molecular interaction kinetics on a microfluidic platform.Distinguishing direct versus indirect transcription factor-DNA interactions.A predictive model of the oxygen and heme regulatory network in yeast Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae RAP: accurate and fast motif finding based on protein-binding microarray data.Learning protein-DNA interaction landscapes by integrating experimental data through computational models.DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction Frequent gain and loss of functional transcription factor binding sites.Evolution and selection in yeast promoters: analyzing the combined effect of diverse transcription factor binding sites Analysis of combinatorial cis-regulation in synthetic and genomic promoters Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos A primer on regression methods for decoding cis-regulatory logic.Transcriptional interaction-assisted identification of dynamic nucleosome positioning Where does mediator bind in vivo?Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors Non-consensus GLI binding sites in Hedgehog target gene regulation.Variable structure motifs for transcription factor binding sites.Conservation and regulatory associations of a wide affinity range of mouse transcription factor binding sites Blurring of high-resolution data shows that the effect of intrinsic nucleosome occupancy on transcription factor binding is mostly regional, not local Knowledge-guided gene ranking by coordinative component analysis.Most transcription factor binding sites are in a few mosaic classes of the human genome.MER41 repeat sequences contain inducible STAT1 binding sites Correlated changes between regulatory cis elements and condition-specific expression in paralogous gene families.Fungal regulatory evolution: cis and trans in the balance.Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression.Location analysis for the estrogen receptor-alpha reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements.Widespread compensatory evolution conserves DNA-encoded nucleosome organization in yeast.Novel computational analysis of protein binding array data identifies direct targets of Nkx2.2 in the pancreas.

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P2860

Extensive low-affinity transcriptional interactions in the yeast genome

http://www.wikidata.org/entity/Q34881942

description

2006 nî lūn-bûn

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2006 թուականի Յունիսին հրատարակուած գիտական յօդուած

@hyw

2006 թվականի հունիսին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年論文

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2006年论文

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name

Extensive low-affinity transcriptional interactions in the yeast genome

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Extensive low-affinity transcriptional interactions in the yeast genome

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Extensive low-affinity transcriptional interactions in the yeast genome

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type

label

Extensive low-affinity transcriptional interactions in the yeast genome

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Extensive low-affinity transcriptional interactions in the yeast genome

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Extensive low-affinity transcriptional interactions in the yeast genome

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prefLabel

Extensive low-affinity transcriptional interactions in the yeast genome

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Extensive low-affinity transcriptional interactions in the yeast genome

@en

Extensive low-affinity transcriptional interactions in the yeast genome

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Genome Research

P1476

Extensive low-affinity transcriptional interactions in the yeast genome

@en

P2093

Amos Tanay

http://www.w3.org/2001/XMLSchema#string

P2860

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells

Sequencing and comparison of yeast species to identify genes and regulatory elements

Noise in gene expression: origins, consequences, and control.

Control of pancreas and liver gene expression by HNF transcription factors

Identifying protein-binding sites from unaligned DNA fragments

Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.

Position specific variation in the rate of evolution in transcription factor binding sites

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962-972

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scholarly article

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10.1101/GR.5113606

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8

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16

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2006-06-29T00:00:00Z

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6974576

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16809671

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1524868

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